Nitrospira defluvii: NIDE2582
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Entry
NIDE2582 CDS
T01281
Symbol
dnaE2
Name
(GenBank) DNA polymerase III, alpha subunit
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
nde
Nitrospira defluvii
Pathway
nde03030
DNA replication
nde03430
Mismatch repair
nde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIDE2582 (dnaE2)
03430 Mismatch repair
NIDE2582 (dnaE2)
03440 Homologous recombination
NIDE2582 (dnaE2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nde03032
]
NIDE2582 (dnaE2)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE2582 (dnaE2)
Enzymes [BR:
nde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NIDE2582 (dnaE2)
DNA replication proteins [BR:
nde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
NIDE2582 (dnaE2)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
NIDE2582 (dnaE2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
HHH_3
Motif
Other DBs
NCBI-ProteinID:
CBK42289
UniProt:
D8PGA2
LinkDB
All DBs
Position
2526496..2529948
Genome browser
AA seq
1150 aa
AA seq
DB search
MASQFVHLHLHTQYSLLDGANQIDPLMQQVKSFGQPAVAMTDHGNMFGAVEFYRKAKEAG
VKPIIGCEAYMAPGSRLEKNSHLAHNDYYHLILLATNLKGYQNLIKLVSKAYLEGFYYKP
RMDKEILQQHHEGLIGLSGCLSGEVAYLIGQKDLAGATKAAGEYREIFGKDNYYLELQAN
GLEHQRIANDGLLEIHKKLDIPLAGTNDCHYLKKEDSRPHDLMLCLQTGKTINDPNRMKF
DTDQLYVKSTEQALSEFKEMPTAVSNTVKIAEACTLDLALNKTYLPQFKVPEGYTRESYV
EQLALEGLAARLKERPSSIPEIAYQVRLKEEVAVICSMGFAGYFLIVWDIIKFARSRGIP
VGPGRGSAAGSLVAYALRITDLDPLVYSLLFERFLNPERVSLPDIDMDFCMDRRDEVINY
VIHKYGEDHVAQIITFGTMKAKAAIRDVGRVLEMPYAEVDRIAKLVPDDLKMTLDKALEQ
EPRLKELVDKDVKVKELMSVAQSLEGLARHASTHAAGIVISDQPLTEHVPLYKGPKDEIV
TQYSMGDVEKIGLVKFDFLGLKTLTMIHRAETLVNEVHPDQPPLRVEQLPFDDPDTFALL
SSGKTTGVFQLESSGMRDLLMGLKPDRFEDIIAIIALYRPGPMDLIPDFIKRKQGKIPIA
YEMPELEPILKDTYGVIVYQEQVMAIANKVAGFSLGQADILRRAMGKKKPEEMEKLRVQF
LEGAKQKKISEKKADKLYELIQKFAGYGFNKSHAAAYAVVCYQTAYLKAHYPTEFMAALM
TTDMGNADKIVGYFTECRGLGIPVLPPDVNQSQKNFAVVDQSIRFGLAAIKNVGEGAVEA
IIEVRNETGPFRSFFDLFRRVDLRKLNKRMMEGLIKAGAFDSMGGRRSQYLAVLDQAMDE
GMSIQKERALGQTSIFGDDTVGMPQQLDEPALPDVPEWNQGELLKYERELTGFYISAHPL
ARYEAAIQLFANTTTMQIPDVPDGREVKLCGIITAVKSMLTKKGDRMAYITLEDLHGLVE
VIAFPDLYRDHADMIVPERVVRLTGTVDRGDKGTKLRGTKIEPLADLQNTGISRVMIRLH
DGPTASTRLPMLRQVFQKYPGASSVSLVMALGGTMEARTSPLPNVKITPSEHFVADIEEV
LGKGAITLVT
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
gtggcatcacaattcgttcatctgcatctccatacccaatacagcctcctcgacggcgcc
aatcagatcgatcccctgatgcaacaggtgaagtcgttcgggcaaccggccgtcgcgatg
accgatcacggcaacatgttcggggcggtggagttctaccggaaggcgaaggaagccggg
gtcaaacccatcatcgggtgcgaagcctacatggcgccgggcagccgcctggagaagaac
tctcacctcgcgcacaatgactactaccacctgattttgctcgcgacaaacctcaaggga
taccagaacttaatcaagttggtgagcaaagcgtatcttgaaggtttctactataagcct
cggatggacaaggaaattcttcagcagcaccatgaaggattaatcggcctctcaggctgt
ctcagcggcgaggttgcgtacctcatcggacagaaggatctggcgggtgccaccaaggcg
gccggtgagtatcgggagattttcggcaaggacaattattacctggaactccaagccaac
gggttggagcatcagcgcatcgccaacgacggcctgctggagatccataagaaactcgac
atcccgctcgccggcaccaacgattgccactacctgaagaaggaagactcccgcccgcac
gacctcatgctgtgcttgcagaccggcaagacgatcaacgatcccaaccgcatgaagttc
gatacggaccagctctacgtcaaatcgaccgagcaggccttgtctgagttcaaagaaatg
ccgacggccgtctcgaacaccgtgaagatcgccgaagcctgtaccctcgacctggcgctc
aataagacctacctgccccagttcaaagtgcccgagggctacacccgcgaatcctatgtg
gagcagctggccctggaaggattggcggcgcgtctcaaggaacggccgagctccattccc
gagatcgcctaccaggtccgactgaaagaagaagtcgcggtgatctgctcgatgggattc
gccggctactttctcatcgtctgggacatcatcaagttcgcccgctcgcgcggcattccg
gtcgggcccggacgcggctccgccgccggcagcctcgtcgcctatgccctgcgcatcacc
gatctcgatccgctcgtgtattccttgctcttcgagcgattcctgaatcctgagcgtgtg
tccctccccgacatcgacatggacttctgcatggatcgccgggatgaagtcatcaactac
gtgatccataaatacggcgaagaccacgttgcgcagatcatcacgttcgggacgatgaag
gccaaggccgccattcgagacgtgggccgcgtgctcgaaatgccctacgccgaagtggat
cggattgcgaagctcgtcccggacgatttgaagatgacgctcgacaaggcgctcgaacag
gagccgcgcctgaaggaactggtcgataaagatgtgaaggtgaaggaactcatgtcggtg
gcgcagtcgctcgaaggcctcgcccgccatgcgtccacccacgcggccggtatcgtgatc
tccgatcagccgctcaccgaacacgtgccgctctacaaaggccccaaggacgaaatcgtc
acccagtattcaatgggggatgtcgaaaaaatcggcctggtgaagttcgacttcctcggg
ctgaaaacgctcaccatgattcatcgcgcggaaacgctggtcaacgaggtgcaccccgat
cagcctcccctgcgcgtcgagcaattgccgttcgacgatcccgacacgttcgcgctgctg
tcgtccggaaaaaccaccggcgtcttccagctcgaaagttccggcatgcgcgatctctta
atgggcttgaagcccgaccggttcgaagacatcatcgccatcatcgcgctctatcgcccc
ggcccgatggacctcattccggacttcatcaaacgcaagcagggcaagattccgatcgcc
tacgagatgcccgagctcgagccgatcctgaaggacacgtacggcgtcatcgtgtaccag
gaacaggtcatggccatcgccaacaaggtggcaggcttctcgctgggacaagcggatatt
ctccgtcgcgccatgggcaaaaagaagcccgaggagatggagaagctccgcgtccaattc
ctggaaggcgcgaaacagaaaaaaatatctgagaagaaggccgacaaactctacgaactt
atccagaagtttgccggatacggcttcaacaaatcgcacgccgccgcctacgcggtggtc
tgttaccagacggcctatctcaaagcccactaccccaccgagttcatggcggcgctgatg
accaccgacatgggcaacgccgacaagatcgtcggttacttcaccgaatgtcgcgggctc
ggcattccggtcctgcccccggacgtgaaccagagccagaagaatttcgccgtcgtggat
cagagcatccgcttcgggctcgcggcgatcaagaatgtcggcgaaggcgcggtcgaagcc
attatcgaagtacgcaacgaaaccggccccttccgctcttttttcgacctctttcgccgg
gtcgatttgcgcaagttgaacaaacgcatgatggaagggttgatcaaggcgggggccttc
gattccatgggcggacggcgatcgcaatatctggccgtgctcgaccaggccatggacgaa
gggatgagcattcagaaagagcgcgcgctcggccagaccagcatcttcggcgacgacacg
gtcggcatgccgcagcaactggacgaaccggccctgcccgacgtgcccgagtggaaccag
ggcgagctgttgaaatacgagcgtgagttgaccggcttctacatcagcgcccatccgttg
gcccggtacgaagccgcgatccaattgttcgccaacaccacgaccatgcagatccccgat
gtgccggacggacgcgaggtcaaactctgcgggatcatcacggcggtgaaatccatgctc
accaaaaagggcgaccgcatggcctacatcacgctggaggatttacatgggctggtagaa
gtgatagccttccccgacctgtatcgagaccatgccgacatgattgtgccggaacgggtc
gtgcgattgacgggcaccgtggatcgcggagacaaaggcaccaagttgcgcgggaccaag
atcgaaccgctggctgatttacagaacacagggatttcgcgggtgatgattcgcctgcac
gacggaccgaccgcttccaccagactgccgatgctccggcaggtattccaaaaatatccc
ggtgcctcgagcgtctctctggtcatggccctcggcggcacgatggaagcgcggacctct
cccctccccaacgtcaagatcacgcccagcgagcatttcgtcgccgatattgaggaagtg
ctaggcaagggcgccatcactttggtaacctag
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