Nitrospira defluvii: NIDE3031
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Entry
NIDE3031 CDS
T01281
Symbol
rfaF_gmhB
Name
(GenBank) Lipopolysaccharide heptosyltransferase II and D, D-heptose 1,7-bisphosphate phosphatase (modular protein)
KO
K02843
lipopolysaccharide heptosyltransferase II [EC:
2.4.99.24
]
Organism
nde
Nitrospira defluvii
Pathway
nde00540
Lipopolysaccharide biosynthesis
nde01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00540 Lipopolysaccharide biosynthesis
NIDE3031 (rfaF_gmhB)
09180 Brite Hierarchies
09181 Protein families: metabolism
01005 Lipopolysaccharide biosynthesis proteins [BR:
nde01005
]
NIDE3031 (rfaF_gmhB)
Enzymes [BR:
nde01000
]
2. Transferases
2.4 Glycosyltransferases
2.4.99 Transferring other glycosyl groups
2.4.99.24 lipopolysaccharide heptosyltransferase II
NIDE3031 (rfaF_gmhB)
Lipopolysaccharide biosynthesis proteins [BR:
nde01005
]
Core region
NIDE3031 (rfaF_gmhB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_transf_9
Hydrolase_like
Hydrolase
HAD_2
PNK3P
Hydrolase_6
HAD
Motif
Other DBs
NCBI-ProteinID:
CBK42727
UniProt:
D8PHJ0
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Position
complement(2982616..2984307)
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AA seq
563 aa
AA seq
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MRKEGIRRIVVRGPNWLGDAVMCEPALSRVRTLFPQAEITLLVKPGIADLLAQHPAVNRT
LVYDDRGRHAGLVGKWSLAAVLRRHRFDLAILFQNAFEAALISFLAGIPRRFGYATDGRT
LLLTDPVTVPPRAAQRHQVEYYWDLLKPLGGHGPAPAPRLYVTPDESALIAGRLADAGIG
PSDLVIGVNPGSTYGHAKRWLPDRYAEVVNRVVKEAQGQSDARVGVAILGAKGEEPLGKA
IADQIKTRTVVCSGQTTVRELMALVKRCQLFLTNDTGPMHVAAAFKVPLVAVFGPTDWQT
TSPFGVDAKLVRQPVSCAPCLLRECPIDHRCMTGVTVEQVHDAAVQHLPLVAPPPAVEPA
SPSPSPSSTSLAGVTVFLDRDGTLNLDTGYVKSPDDFTVLPGVGAALARLKQAGARLVVV
TNQSGLGRGYFTSRDLEAIHSKLRLVLAEDGVTLDGLYFCPHHPDDHCNCRKPARGMIDR
AHAELQVDLSRSYVIGDSVRDVELAKQVGAQSLLVMTGPSGAEALADLTARDLPPDYVAE
GLSQAVDWIVAHATHRPAADLQR
NT seq
1692 nt
NT seq
+upstream
nt +downstream
nt
atgcgtaaggaagggatccgtcgcatcgtcgtccgcgggcccaattggctgggagatgcc
gtcatgtgcgaaccggctttgagccgggtacgcaccctgtttccgcaggccgagatcact
ctgctcgtgaagcccggcattgcggatctgctggcgcagcatccggcggtgaaccggacg
ctggtgtatgacgatcggggacgccatgcggggctggtcgggaaatggagcctggccgcg
gtgctgcgtcgtcaccgattcgacctggctatcctgtttcagaatgcgttcgaggcggcg
ctgatcagtttcctggcgggtattcccagacgattcggctacgcgacggacggccgaacg
ctgttgctgaccgacccggtgaccgtgcctccacgcgccgcgcaacggcatcaggtcgag
tattactgggatctcctgaagccgctgggcgggcacggtcctgcgcctgcgcctcgtctg
tatgtcacgccggatgaatcggcgctgatcgccgggcggctggcggatgccggaatcggt
ccgtcggatctggtgatcggggtgaaccccggctcgacctatggccatgccaaacgatgg
ttgccggatcgatacgccgaggtcgtgaatcgtgtggtgaaggaggcccaggggcaatcg
gatgccagagtcggcgtggcgatcctgggagccaagggtgaggagccgctgggaaaagcc
atcgccgaccagatcaagacccgcacggtcgtctgttccggccagaccacggtgcgagaa
ttgatggcgctcgtgaagcggtgtcagttgtttctcacgaacgacacggggcccatgcac
gtggccgcggccttcaaggttccgctggtagctgtgttcggtccgaccgattggcagacg
acctcgccgttcggcgtcgacgccaagttggtccggcagccggtctcctgcgcgccctgt
ctcttgcgggagtgtcctatcgatcaccgctgcatgaccggggtgacggtggagcaggtc
cacgatgcagcggtgcagcatctgccgctggtggcccctcctccggcggtcgaaccggcg
tcgccgtcgccaagcccttcttccacgtcgctggcgggtgtcacggtgtttctcgatcgt
gacggcacattgaacctcgatacggggtatgtgaagtctcccgatgacttcacggttcta
cccggcgtgggggcggcgttggccaggttgaaacaggcgggggcgcgtctggtcgtcgtc
acgaatcagtctgggctggggcggggatattttacctcaagggatctcgaagcgattcac
agcaagttgcggctggtgctggctgaggacggggtgacgctcgatggtctgtatttctgt
ccccaccatcccgacgatcactgcaattgtcgcaaaccggcccggggcatgatcgaccgg
gcccatgccgaattgcaggtggacctgagccgctcgtatgtgatcggcgacagtgttcgt
gatgtcgaattggccaagcaggtgggggcgcagagtctgctggtgatgaccggcccgtcc
ggtgcggaggccctggccgacttgacggcgcgcgatctgcctcctgactatgtggccgag
gggttgtcgcaggcggtggactggatcgtcgcccatgcgacgcacaggcccgccgccgac
ctacagcgctga
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