Nitrospira defluvii: NIDE3200
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Entry
NIDE3200 CDS
T01281
Name
(GenBank) putative Ribonuclease Z
KO
K00784
ribonuclease Z [EC:
3.1.26.11
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nde03016
]
NIDE3200
Enzymes [BR:
nde01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.11 tRNase Z
NIDE3200
Transfer RNA biogenesis [BR:
nde03016
]
Eukaryotic type
3'processing and CCA adding factors
3'processing factors
NIDE3200
Prokaryotic type
NIDE3200
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Lactamase_B_2
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
CBK42894
UniProt:
D8PI07
LinkDB
All DBs
Position
3162702..3163721
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AA seq
339 aa
AA seq
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MNPSFSGHLVNDVFGDPGLFVEVRWSKRALLFDLGHNDALGPTRLLRAGDIFISHTHMDH
FIGFDTLLRVALGRGKTLRLYGPPGLIANVQGKLHGYTWNLVDGYPLTITVQEFHEQTNQ
GATFLATDGFQRHDVPAPSPLNRKSGHRFSVLEDPMFTVEAVTLNHRIPSLAYSLQEQFH
VNVNKERLHEAGLPVGYWLKEVKQYLWQGKPDDFRFHATLYHEHHREEREFALGEVRERF
ITISRGQKLAYVVDARYDEENEAKIVELAQGADIFYCEAPYLDQDADKARDRHHLTARQA
GVMAKKAGVRELAVFHFSPRYTGLGHRIEAEAQQAFRGS
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atgaacccttccttctcaggtcacctcgtcaatgatgtcttcggcgaccccgggctgttc
gtagaagtgcgctggtccaagcgcgccctcctcttcgatctgggccacaacgatgcgctc
gggccaacccgcctgctgcgcgccggcgacatcttcatttcgcacacgcacatggaccac
tttatcggcttcgatacgttgctccgggtggccctggggcgcggtaagactctgcggctc
tacggaccaccgggactgatcgccaatgttcaaggtaagcttcatggctatacctggaac
ctcgtggatgggtatccgctcactatcaccgtgcaggaattccatgagcagacaaaccaa
ggcgcaaccttcctggcaaccgatggatttcagcgtcacgatgttccggccccaagcccc
ctcaaccggaaatccggtcaccgcttttccgtgctcgaagatcccatgttcaccgtggag
gctgtgacactcaatcaccgcattccctctctggcctactcgctgcaggaacagtttcat
gtgaacgtcaacaaggagcggctgcacgaagccgggctaccggtcggctattggctgaag
gaagtgaagcagtacctctggcaaggcaagccggacgactttcgatttcacgccacgctc
taccatgaacaccacagggaggagagggaatttgccctgggtgaggtgcgcgagcgattc
attaccatcagccgtggccagaagctcgcctatgtcgtggatgcccgatacgacgaagag
aacgaagccaagatcgtcgagcttgcgcaaggcgccgacatcttttactgtgaggccccc
tacctggatcaggatgcggacaaggcgagggatcgccaccacctcaccgcgcgccaggcc
ggagtcatggcgaagaaagccggcgtgcgcgagctggcggtcttccacttctctccgcgc
tatacgggactcggacatcggatcgaggcggaagcacaacaggcatttcgaggcagctga
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