Nitrospira defluvii: NIDE3498
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Entry
NIDE3498 CDS
T01281
Name
(GenBank) Sigma-54 dependent transcriptional regulator (modular protein)
KO
K15836
formate hydrogenlyase transcriptional activator
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
nde03000
]
NIDE3498
Transcription factors [BR:
nde03000
]
Prokaryotic type
Helix-turn-helix
Other families
NIDE3498
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_activat
GAF
GAF_2
GAF_3
Sigma54_activ_2
AAA_5
HTH_8
Autoind_bind
MCM
Mg_chelatase
AAA_2
AAA_16
AAA
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
CBK43183
UniProt:
D8PIU6
LinkDB
All DBs
Position
complement(3491411..3494011)
Genome browser
AA seq
866 aa
AA seq
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MRDTLPTELETSAGDPRKALLQVAEAISLHRDLPALFRDLAQRLPAVAPFDFIGLVLHDP
AKQVMKVHVLETVEALGVTNRLDGMEIPMEESASGWVWSHQQPLMIPSLADETRYKPGLG
ALRSIGVQSLCFCPLTTAMRRLGAIGFGSLRTSAFGDADVEFLNQVAKLVAVAVDNVLHH
QALSDERDRLQLLLDVTESIASHRDLTRLLEDLAGRLPQLVPFDFIDAVLHDPATDKMRL
WLLVTSEPSTLRPGLETPIEESPGGLVWKTQQPLTVHDVAQEARFPGLMTLFRENGVRAF
CVVPLTTAHRRLGAMGFGSLQPRVYEKREIALMQQVAKQVAVALDNALNGETALTYQGQL
TRERDRQRLLLEVNNAVVSHLDLDQLFPAVSACLRRVIQHDGSSLLLCNDETGQWRIHVL
DFERNESFIEEGRIEESPRSPSCQAITTGQAAVFGENELREMADSSPMAQELLDFGAKSF
CSLPLLSHNRTLGALNVCRRGEGGFSPEDVQLLAQVAQQVAIAVENALAFREIAALKDKL
ANEKVYLEEEIQTAYNFEEIVGDSRALKQVLKQVQTVATTDSTVLILGETGSGKELIARA
LHSLSDRRERTFVKLNCAAIPTGLLESELFGHEKGAFTGAIATKIGRFELADGGTIFLDE
VGEIPLELQVKLLRVLQEQEFERLGSTRTIRVNVRVIAATNRDLGQMVEEHKFRSDLYYR
LKVFPITVPPLRERAEDVPLLVRHFVQKFAARMKRRIETVPAEAMKALQAYSWPGNVREL
ENYIERAVILSSGSELFVSTAELKRAAPVGNGSATTLEDAEREHILKALRETNWVIGGDA
GAAARLGMKRTTLQSKMQKLGIARPR
NT seq
2601 nt
NT seq
+upstream
nt +downstream
nt
atgcgagatacccttccgaccgaactcgaaacgagcgccggcgatccgcgcaaggccctc
ctgcaggttgccgaagcgatttctctgcacagggatctcccggccctgtttcgagacctc
gcacaacggctgcccgctgtcgccccgttcgatttcatcggcctggtgctgcacgatccg
gcgaagcaggtcatgaaggtgcatgtgcttgaaacggttgaggcgctaggggtaacgaac
cgactggacggcatggaaattccgatggaggagtccgccagcggctgggtctggtcgcat
cagcagccgttgatgatcccgtcgctggccgatgaaacgcggtacaagcccgggctcggc
gcgctccggagcatcggcgtgcaatcgctctgcttctgtcccctcaccacggcgatgcgg
cggctcggcgcgatcggattcggcagtctgagaacctccgccttcggtgatgccgatgtg
gagtttctcaatcaggtcgccaaactggtcgccgttgccgtggacaacgtgctgcaccac
caggccttgagcgacgagcgcgatcggctgcaactgctgctggacgtgacagaatcgatc
gcctcccatcgtgacctcacccgactgcttgaggacttggccggacggttgccccaactc
gtgccgttcgatttcatcgacgcggtgctccatgaccccgcgaccgacaagatgcgcttg
tggctgctggtgacctcggagccctcgacccttcgtcccgggctcgaaacacccatcgag
gaatcgcccggcggcttggtgtggaaaacccagcaaccgttgacggttcatgatgttgcg
caagaagctcgcttccccggattgatgacgttgtttcgcgagaacggggtacgggcgttt
tgtgtcgtgccgctcacgacggcgcatcgccggctgggcgccatggggttcggcagtctc
cagccgcgggtctatgagaaacgtgagattgccctcatgcagcaagtggccaagcaggtg
gcggtggccctggacaatgcgcttaacggcgaaacggccttgacctatcaggggcagctg
acgcgggagcgcgatcgccagcgcctgttgctggaggtcaacaatgcggtggtgtcccac
ctggatctggatcaactgtttccagcggtcagcgcctgtctgcgccgggtaattcaacac
gatggctccagcctgctcctgtgcaatgacgagacggggcaatggcgcatccacgttctc
gattttgaacggaacgaaagcttcatcgaggaaggacggatcgaagagagcccacgctct
ccctcgtgccaggcgatcacgaccggccaggcggccgtattcggagaaaacgagctcaga
gaaatggcagactcttcgcccatggcgcaggaactcctggactttggcgccaagtcgttc
tgttccttaccgctcctgtcgcacaatcgcacgctcggggccttgaacgtctgccggcgc
ggtgagggagggttcagcccggaggacgtgcaactcctggcccaagtcgcccagcaagtc
gcgatcgcggtggagaacgcgctcgcattccgggagattgccgcgctgaaggataagctc
gccaacgagaaggtgtatctcgaggaggaaattcagactgcgtacaacttcgaggagatc
gtcggggacagtcgcgccctgaagcaggtgctcaaacaggttcagaccgtcgcgacgacc
gattccactgtgctgatactcggtgaaacgggcagcgggaaggagttgatcgcgagggcc
ttgcacagtctcagcgatcgaagggaacggaccttcgtaaaactcaattgtgccgcgatt
cccacaggcctgctggagagcgaactgttcgggcatgaaaagggagcctttaccggggcc
atcgcaacgaagatcgggcggtttgaattggccgacggcggaaccatcttcctggacgaa
gtgggggagataccgttggagcttcaggtcaagctgctgcgggtgttgcaggagcaggag
ttcgagcggttgggcagcaccagaactattcgtgtcaacgtccgggtgatcgccgcaacc
aatcgggatcttggccagatggtggaggaacacaagttccgcagcgatctctactatcgc
ctcaaggtgttcccgatcacggtgccgccgcttcgcgaacgtgcggaagatgtgcccttg
ctggtccggcacttcgtccagaaattcgccgcgcgcatgaagcgacggatcgaaactgtt
ccggctgaggccatgaaagcgcttcaggcctattcctggcccggcaatgtgcgggagctg
gagaattacatcgaacgggcggtgatcctgtcttccggttccgagttattcgtctccacc
gctgaactgaaacgcgctgccccggtggggaacggatcggccacgacgctggaggatgcc
gagcgcgagcacattctcaaggcgctgagggagacgaattgggtcatcggcggcgacgcc
ggggctgcggcccgcctgggaatgaagcgcaccacgctccagtccaaaatgcagaagctc
ggcatcgcgcgccctcgatag
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