Nitrospira defluvii: NIDE3723
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Entry
NIDE3723 CDS
T01281
Name
(GenBank) 2',3'-cyclic-nucleotide 2'-phosphodiesterase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
nde
Nitrospira defluvii
Pathway
nde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIDE3723
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nde03019
]
NIDE3723
Messenger RNA biogenesis [BR:
nde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NIDE3723
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_2
KhpA-B_KH
DUF1490
Motif
Other DBs
NCBI-ProteinID:
CBK43401
UniProt:
D8P7Q5
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All DBs
Position
complement(3705246..3706823)
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AA seq
525 aa
AA seq
DB search
MVPISLSVVAYIFVGLVGAVLGVGLYEVFRRRSALARRAEAEDQSAQIVQSAQREAENLV
KEAKLEAKDLVFQARIELEKEQKAKLAEVSNSERRVSQREEGLDRKLGLLEKRDQEALKR
EQELLKREETLVQKDAACAQALKQHREALERVAGLTAEEAKRQLIQELDSQARLEAAGLA
KRLLEEAKENADREAREIIASSIQRVTRDYVNEATISVVPIANDAMKGRIIGREGRNIRA
IEAATGIDLIIDETPEAVIISGFDPLRREIAKVSLERLMHDGRIHPTRIEEIVEKVKVDI
EKLMIEEAEKVIFEVGLSDFHPELVKVLGRLKYRTSYGQNNLYHAREAAYICGIMASELK
LDVKLAKRGALLHDIGKAVSHEEEGPHAMLGAEIAKKYGENAKVVNAIAAHHEQVEPICP
ETVLVAAAEALSAARPGARREALESYVKRLEKLESLATVHKGVQKAYAIQAGREIRVIVK
QEDLTDPECFQLSRDLAKKIEQELTYPGQIKVTVIRESRFVDFAK
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
gtggttcccatttctctcagcgttgttgcgtacatttttgtcggattagtgggagcggtc
ctgggtgtcgggctgtatgaggtctttcgccgtcggtcggcgttggctcgtcgtgccgag
gccgaggaccagtcggcgcagatcgttcaatcggctcagcgtgaagcagagaatctcgtc
aaagaggccaagctggaggccaaggatctggtctttcaagcaagaatcgaactcgaaaag
gaacaaaaggccaagcttgccgaagtgtccaattcggaacggcgtgtgtcccaacgggaa
gaggggctggatcgcaagctcggcctgctggagaagcgggaccaggaagcgctcaagcgg
gagcaggagttgctcaagcgcgaagagacactggtccagaaggacgcggcctgcgcgcag
gcgctgaagcagcatcgggaggcccttgagcgggtggccggcttgacggctgaggaagcc
aagcggcaactcattcaggagctggatagccaggcgagattggaagcggccggcctggcc
aaacgcctgctcgaagaggctaaggaaaatgccgaccgggaggccagggaaatcatcgcc
agttccatccagcgcgtgacgcgggattatgtgaatgaagcgaccatctcggtggtgccg
attgccaacgatgcgatgaagggccggatcatcggtcgagaaggacggaacatccgggcg
atcgaggcggcgacggggatcgacctcattatcgatgaaacgccggaagcggtcattatt
tcagggttcgatccgctgcgtcgtgagatcgccaaggtctcgcttgagcggctcatgcac
gacggccgaattcatccgacgcgtattgaagagatcgtcgaaaaggtgaaggtcgatatc
gagaagctgatgatcgaagaggctgaaaaggtgatcttcgaggtcggcttgtctgatttt
caccccgagttagtcaaggtcttggggcggctcaagtaccgaaccagctatgggcagaat
aatctgtaccatgcgcgggaagcggcctacatctgcggcatcatggcctccgagttgaag
ctcgacgtgaagctcgccaaacgcggcgccttgttgcacgatatcggaaaggccgtgagt
cacgaggaagaaggcccgcatgccatgctgggtgcggagatcgccaagaagtacggcgaa
aacgccaaagtggtgaatgccattgcggcgcatcacgaacaggttgagcccatttgtccg
gagaccgtactggtggcggcggcggaagcgctgtcggcggcacggccgggggcgcgccgt
gaagcgttggagtcgtatgtgaagcggctggagaagttggagtcgctggccaccgttcac
aagggtgtgcagaaggcctatgcgattcaagcgggtcgtgaaattcgtgtcattgtgaag
caggaagatttaacggacccggaatgcttccagttgtcacgggatctggcgaagaagatc
gagcaggagctgacttacccggggcaaatcaaggtgacggtgatccgggagagccggttt
gttgatttcgcgaaatga
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