Nitrospira defluvii: NIDE4047
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Entry
NIDE4047 CDS
T01281
Symbol
hupB
Name
(GenBank) Transcriptional dual regulator HU-beta
KO
K03530
DNA-binding protein HU-beta
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nde03032
]
NIDE4047 (hupB)
03036 Chromosome and associated proteins [BR:
nde03036
]
NIDE4047 (hupB)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE4047 (hupB)
DNA replication proteins [BR:
nde03032
]
Prokaryotic type
DNA Replication Initiation Factors
Initiation factors (bacterial)
NIDE4047 (hupB)
Chromosome and associated proteins [BR:
nde03036
]
Prokaryotic type
Nucleoid associated proteins
HU (heat unstable protein)
NIDE4047 (hupB)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Supressor
NIDE4047 (hupB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Bac_DNA_binding
Motif
Other DBs
NCBI-ProteinID:
CBK43716
UniProt:
D8P884
LinkDB
All DBs
Position
complement(4002695..4002982)
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AA seq
95 aa
AA seq
DB search
MAKSMTKSQIADHLAGKAGITKKTAVQFLDDFAALAYREAKNAFVVPGIGKLVLANRKAR
MGRNPQTGEPIKIPAKRVVKFRVAKMAKDSILGKK
NT seq
288 nt
NT seq
+upstream
nt +downstream
nt
atggccaagtcgatgacgaaatcgcagattgctgaccatcttgctggaaaggcggggatt
accaagaagacggctgtccagttcctggacgattttgccgctctcgcctatcgcgaagcg
aagaatgccttcgtagtaccgggaatcggaaagttggtgctggccaatcggaaggcccgc
atgggtcggaacccgcaaacgggtgagccgatcaagattccggccaagcgggtggtgaag
ttccgagtcgcgaagatggccaaagattcgatcctcggaaagaagtag
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integrated database retrieval system
