Nitrospira defluvii: NIDE4127
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Entry
NIDE4127 CDS
T01281
Symbol
pnp
Name
(GenBank) Polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
nde
Nitrospira defluvii
Pathway
nde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NIDE4127 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
nde03019
]
NIDE4127 (pnp)
03016 Transfer RNA biogenesis [BR:
nde03016
]
NIDE4127 (pnp)
Enzymes [BR:
nde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
NIDE4127 (pnp)
Messenger RNA biogenesis [BR:
nde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NIDE4127 (pnp)
Transfer RNA biogenesis [BR:
nde03016
]
Prokaryotic type
tRNA degradation factors
NIDE4127 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
PNPase
KH_1
KH-I_KHDC4-BBP
Phos_pyr_kin
S1_RRP5
DUF5813
PdxA
Ferritin
Motif
Other DBs
NCBI-ProteinID:
CBK43795
UniProt:
D8P8G3
LinkDB
All DBs
Position
complement(4078695..4080812)
Genome browser
AA seq
705 aa
AA seq
DB search
MKHVVDIELAGRRLTLETGRIAKQADGAIWATYGDTVVLATAVASQNAKPGVDFLPLTVD
YQEKTYAAGKIPGGYFKREGRPSEREVLTSRLIDRPLRPLFPEGYYFETQVIASVLSADK
TGVSDVIGIIAASAALAVSSIPFNGPIAGVKIGRVNGQFVVNPDLETLETSDLHLVVAGT
ADAVMMVEAGANELPEATMLEAIELAHSEIKKIVAKIEELRKLVGKVKRVVVQEAIDAAL
TEQVRALVAGPIREAILIPNKSARQERLDQVLAETVAKLKSDEPNRDRHVKIIFHGLEYT
EVRNMILEKRVRADGRGPADIRPITCEVGVLPRAHGSAVFTRGETQSLAVVTLGTTDDEQ
RIDALEGEYMRTFMLHYNFPPFSVGEARPLRSPGRREVGHGALAERALKSIIPGKDKFPY
TVRIVSEILESNGSSSMATVCGGTLALLDAGVPIKEPVAGIAMGLIKEGDQVLVLSDILG
LEDHLGDMDFKVTGTKNGVTALQMDIKIGGITAGLMREALAQAKAGRLHILGCMAQALTE
PRTKLSAFAPRIFPMKIKQDKIRDVIGPGGKMIRSIIAETGVKINVEDTGDVTIASSDEA
SAQKAIDMIKRLTEEVEVGKIYLGTVRKIMDFGAFVEVLPGTDGLVHISQLAHHRVKAVT
DEVSEGDQVMVKVLEIDKQGKIRLSRKEAMPAPAGSPATEPTPAG
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atgaaacatgttgtagacattgagctggccgggcgccggttgacgctggagaccggacgc
atcgcgaagcaggcggatggcgccatctgggccacctacggtgataccgtagtgctcgca
acggccgttgcgtcacaaaatgccaagccgggagtggattttcttccgctgaccgtggat
taccaggaaaagacgtatgcggccggtaagattccgggcggctattttaagcgggaaggt
cggccttcggagcgggaagtgctcacaagccggttgattgatcggccgctccgcccgctc
tttcctgaaggctactacttcgagacgcaagtcatcgcctcggtcttgtctgcggataag
acaggcgtgtcggacgtcatcggcattatcgcagcctccgcggcgttagcggtctcgtcg
attcccttcaacgggccgatcgccggcgtaaagatcggtcgggtgaacgggcagttcgtg
gtgaaccccgatctggaaaccctggaaaccagcgatctccatctcgtcgtggcggggact
gccgacgcggtcatgatggtcgaagccggcgccaatgaattgccggaagcgaccatgctc
gaagctatcgagctggcgcacagcgaaatcaagaaaatcgtcgcgaagatcgaagaactg
cgcaagctggtcggcaaggtgaagcgggttgtggtgcaggaggcgattgacgccgcgttg
accgagcaggtgcgggcgctggtggctgggccgattcgcgaagccatcctcatccccaat
aagagcgcacgacaggaacgtctggatcaggtgctggccgagacggttgcgaagctcaag
tcggatgagcccaaccgtgaccggcatgtcaaaataatttttcatggtctggaatacacc
gaagttcgcaacatgattctcgaaaagcgggtgcgtgccgacgggcgtggcccggcggac
attcgcccgattacctgcgaagtcggagtcctgccgcgtgcgcacggttccgcagtcttc
acccgcggggaaactcagagtctggcggtggtgacgctgggcacgactgatgatgagcaa
cgcatcgatgccttggagggcgagtatatgcgcaccttcatgctgcattacaatttccct
cccttcagtgtcggtgaggcgcggccgttgcggtcgcccggccgtcgcgaggtcgggcat
ggcgcccttgccgagcgcgcgctcaagtcgattattcccggcaaggataagttcccctat
accgtgcggattgtttcggaaatcctggagtcgaacggatcctcttcaatggcgacggtg
tgcggcggcacgctggcgctcttggatgctggcgttccgattaaggagccggtggcgggg
attgcgatggggttgatcaaggaaggcgaccaagtgttggtactgtccgatattctcgga
ttagaggatcacctgggcgatatggactttaaggtcacagggacgaaaaacggcgtgacg
gcgcttcagatggatatcaagatcggcggcatcaccgccggattgatgcgcgaagcgctg
gcccaggcaaaggcgggtcggttgcacattctcgggtgtatggcccaggcgttgaccgaa
ccgcgcaccaagctgtcagccttcgctccgcggatattcccgatgaagatcaagcaagac
aagatccgcgacgtcatcggcccgggtggaaagatgatccgcagcatcatcgcggagacc
ggtgtgaagatcaatgtcgaagacaccggcgatgtgacgattgcctcttctgatgaagca
tcggcacagaaggctatcgatatgatcaagcgcctgaccgaggaggtcgaggtcggcaag
atctatcttggaacggtccggaagattatggacttcggcgcatttgtcgaagtgcttccc
ggtacggacggcctggtgcacatctcccagctggctcatcatcgcgtcaaggcagtcacc
gacgaggtatcggagggcgatcaggtaatggtaaaggtgctggaaattgataagcagggg
aagattcgcctgagccggaaggaagccatgccggcaccggctggctctcctgccaccgaa
ccaacgcccgcaggataa
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