Nitrospira defluvii: NIDE4130
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Entry
NIDE4130 CDS
T01281
Symbol
truB
Name
(GenBank) tRNA pseudouridine synthase B
KO
K03177
tRNA pseudouridine55 synthase [EC:
5.4.99.25
]
Organism
nde
Nitrospira defluvii
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
nde03016
]
NIDE4130 (truB)
Enzymes [BR:
nde01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.25 tRNA pseudouridine55 synthase
NIDE4130 (truB)
Transfer RNA biogenesis [BR:
nde03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
NIDE4130 (truB)
Prokaryotic type
NIDE4130 (truB)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TruB_N
TruB_C_2
Motif
Other DBs
NCBI-ProteinID:
CBK43798
UniProt:
D8P8G6
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All DBs
Position
complement(4081286..4082299)
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AA seq
337 aa
AA seq
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MEPRATTVLQDGVLNVRKEAGWTSHDVVARIRGKLRGMKLGHAGTLDPAATGVLPLLVGR
GTRIAEFLLEWDKTYLAGLRLGETTDTQDSTGTVLLRSPTESLSEARIREVVAGFEGRIQ
QLPPMYSAVKVGGVPLYKAARAGREVSRQAREVTVFRLDIVDIQIPEVTLRVVCSKGTYI
RTLCADIGDKLGVGGHMARLVRERVGPLTVDQALTVDEVESRLEQGTLAASMLTLDQALL
GLPTCIVGAATAGRVLHGMPVPVSEVLAWHGPSSPFSGGANRAIRIKDGAGRLLAIGTMP
EGMNIEAPAANVQSIAVSKVLVTEESQGGSIANSIEE
NT seq
1014 nt
NT seq
+upstream
nt +downstream
nt
atggagccacgcgcgaccactgtgcttcaggacggagtgttgaatgtccgcaaggaagcc
ggatggacgtcgcacgatgtggtggctcgtattcgtgggaagttacgcggcatgaagttg
ggccatgctggaacgttggatccggcggcgaccggcgtcctgccgttgctcgtggggcgt
ggaacgcgcatcgctgaatttttgctggaatgggacaaaacctatctggccgggttgcgc
ctcggtgaaacaaccgacacgcaagattccaccgggaccgtgctcctgcgttcaccgact
gagtcgttgtccgaagcccgcatccgtgaagtggtagccgggtttgaggggcgcattcag
caactccctcctatgtattctgcggtaaaagtcggcggggttcccctatacaaggcggcg
cgagccgggcgggaggtctcccggcaggctcgtgaagtgaccgtctttcgtcttgatatc
gtggatattcagattcctgaagtgacgctccgggtggtctgttccaaggggacgtatatc
aggacgctctgcgcggatatcggcgacaagttaggggtcggcggtcatatggcgaggttg
gttcgtgaacgcgtgggaccgttgaccgtggaccaggcgttgacggtggacgaagtcgaa
tcacgcttggagcaaggcacgctggcggcgtcgatgttgacgttggatcaggcgctgctc
ggacttccgacttgcatcgtgggagcggcgacggccggacgggtcctgcacggcatgccg
gttcccgtctcagaagtcctggcctggcatggtccgtcctcgcctttctctgggggggcg
aatcgggccattcgcatcaaggacggagcggggcggttattagccatcggtacgatgccg
gagggcatgaatattgaggcgccggcggcgaatgtgcagtcgattgctgtatcgaaggta
ttggtcacagaagaatcacagggtggtagtatcgcgaactcaatagaggagtag
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