Nitrospira defluvii: NIDE4158
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Entry
NIDE4158 CDS
T01281
Symbol
polA
Name
(GenBank) DNA polymerase I
KO
K02335
DNA polymerase I [EC:
2.7.7.7
]
Organism
nde
Nitrospira defluvii
Pathway
nde03030
DNA replication
nde03410
Base excision repair
nde03420
Nucleotide excision repair
nde03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
nde00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NIDE4158 (polA)
03410 Base excision repair
NIDE4158 (polA)
03420 Nucleotide excision repair
NIDE4158 (polA)
03440 Homologous recombination
NIDE4158 (polA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
nde03032
]
NIDE4158 (polA)
03400 DNA repair and recombination proteins [BR:
nde03400
]
NIDE4158 (polA)
Enzymes [BR:
nde01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
NIDE4158 (polA)
DNA replication proteins [BR:
nde03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NIDE4158 (polA)
DNA repair and recombination proteins [BR:
nde03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA polymerase I
NIDE4158 (polA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NIDE4158 (polA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A
5_3_exonuc_N
5_3_exonuc
DNA_polI_exo1
DNA_pol_A_exo1
HHH_5
HHH_2
Motif
Other DBs
NCBI-ProteinID:
CBK43826
UniProt:
D8P8J4
LinkDB
All DBs
Position
complement(4107844..4110489)
Genome browser
AA seq
881 aa
AA seq
DB search
MPTLYLIDGSAYIYRAFFALPPLSNSKGLQTNAVYGFTTMLLKVLRDHRPDYVAVVFDEK
GPTHRHEAFKDYKAQRPPMPQGMSAQIPYIHRVVEALSLPVIRQAGYEADDLIGTLARKG
EVEGLEVVIVTSDKDMFQLLTPKTRIYDPVKDKWFGEADSQGRFGVEPARVVEIMGLMGD
TSDNIPGVKGIGEKTAVKLITQFGTIEELLSRIEEVTPAKTKKLLLEQGEQARMSKQLAT
IQLDCPLEFVPDHFQAKAPQTETLVSLLRELEFMTLAKAFQGETPEQNRLGAEVEQIRDA
VAADAFLKKQPAAAMLGIACVLTGEPGVRADIRGCALGRFDGSAAFVQGEARDWPQPLVE
CLRDGSKLKAVQDLKPLLLALHRQGIDMPGPYFDTMVADYLLNPNRRAHTLEAIAMDLLS
YQLGAGEREDTSKGPQSLFDVDEALVRRTGEAAAVTAKVAPMLRERLKEQGSLSLFQDVE
MPLVPVLAEIERNGFLLDVAGLQALSKELEHELEQMVGSIYRLGGGEFNIGSPKQLATVL
FETLGLKPLRKTKTGYSTDEDTLTQLASQHELPAQILNYRTLTKLKSTYVDALPQLVNPE
TKRLHTSLNQTVAATGRLSSTDPNLQNIPVKGDYGLRIREAFIAPPGHQLLCADYSQVEP
RILAHLSQDPRLLQVFEKGEDIHMATAMEIFNLPAGEVTRDMRRAAKSVVFGIVYGISPF
GLASNIGVPQADAKKYIETFFEKFAAVRALMDRNIDDGKTKGYTTTILGRRRPIPELQGG
DPSQRGVGERMAVNSPIQGSAADLIKVAMIKVHQRLQNELPRCKMILQVHDELIFEVPEQ
ELEQAKQLVKAEMEATGAALGLSVPLKVDLGVGLNWRVAHP
NT seq
2646 nt
NT seq
+upstream
nt +downstream
nt
atgcccacactctatctcatcgacggtagcgcttacatttatcgggcgttttttgccctg
ccgcccctgtccaattccaagggtctgcagaccaatgcggtgtatggcttcacgacgatg
ttgctgaaggtcctgcgtgaccatcggccggactatgtggccgtggtgttcgatgaaaag
ggcccgacccaccgccatgaggcgttcaaagactataaggcgcaacggccccccatgccg
caggggatgagtgcacagattccgtacattcatcgcgtggtggaggccctgtctctaccg
gtcatcagacaagcggggtatgaggccgacgatctgatcggcaccctggcacgaaagggg
gaggtcgagggcctcgaggttgtgatcgtcaccagcgacaaagacatgttccaactgctc
acccccaagacgcgcatttacgatcccgtgaaagataagtggtttggtgaagcagattcg
caggggcgctttggcgtggagccggcgcgggtggtcgagatcatgggcctcatgggtgac
accagcgacaacattcccggcgtcaaaggcataggcgaaaagacggcggtgaaactgatt
acgcagtttggcacgatcgaggagctgctgagtcgaatcgaggaggtcacgccggcaaaa
accaagaaactgttgctggaacagggcgagcaggcgcggatgagtaagcagctcgcaacg
attcagctggactgcccgcttgaatttgtcccggaccacttccaggcgaaggcgccgcag
actgagacgctggtgagtttgttgcgcgagctggagttcatgacgctggcgaaggcgttt
cagggcgagacacctgagcagaatcggctgggggctgaggtcgaacagattcgcgatgct
gtggcggcggacgcctttctgaagaagcaaccggccgctgcgatgttgggtatcgcctgt
gtcctgaccggcgagccgggggtgcgcgccgatattcgaggttgcgcgttaggtcggttc
gatggaagtgcggccttcgtgcagggcgaggcgcgtgattggccacagccgcttgttgag
tgcctgcgtgatgggagtaagctgaaagccgttcaggatctcaagccgctgttgttggcg
ctccaccgtcagggcatcgacatgcccgggccctatttcgatacgatggtggcggactat
ctgctgaacccgaatcgccgcgcccataccctggaagccattgccatggacctgctgagt
tatcagctgggtgcgggtgagcgcgaagataccagcaagggaccgcaatccctgttcgat
gttgatgaggcgctggttcgtcgaaccggtgaagcggcagccgtgacagccaaggtggcg
ccgatgcttcgcgagcggttaaaagagcagggaagcctatcactctttcaagatgtggag
atgccgctggtgccggtcctggccgagatcgaacggaatggcttcttgctcgacgtcgca
ggcctgcaggctctgagcaaggagctggagcatgagctggagcagatggtgggcagcatt
taccgtctgggcggcggtgaattcaatattggctcgcccaagcagctcgccacggtgctc
ttcgaaaccctcggcctgaagccgctgcgcaaaacgaagaccggctactccacggatgaa
gacaccctcacgcaacttgcctcgcagcatgagttgccggcgcagattctgaactaccgg
accctgacgaaacttaaatcgacctatgttgatgccttgccgcagttggtgaatcctgag
accaagcggctccatacttcgttgaatcagaccgtcgcggcgaccggacgactgtcttcg
accgacccgaatctacagaacattccggtgaagggtgactacggcttgcgtatccgagaa
gcgttcatcgcgccgccggggcatcaactgctctgcgccgactacagtcaggtcgagccg
cggattttagcgcatctctcgcaagaccctcgcctgctgcaggtcttcgagaagggcgaa
gacattcatatggccacggccatggagatttttaatctgcctgccggagaggtcacgcgt
gacatgcggcgcgcggcgaagagcgtggtgttcgggattgtgtacggcatcagcccgttc
gggctcgcatccaacatcggtgtgccgcaagccgacgccaagaaatatatcgagacgttc
ttcgagaagtttgcggctgtgcgggccttgatggaccgcaacatcgacgacggcaagaca
aagggctatacgacgaccatcctcggccgccgccgcccgatcccggagttgcagggcggc
gatccctcgcagcgcggcgtcggtgagcgcatggcggtgaatagtccgattcaaggatcg
gccgccgatctgatcaaggtggccatgatcaaggttcatcaacgcctccagaacgaactg
ccccgctgcaagatgatcctccaagtccatgacgagttgattttcgaagtgccggagcag
gaattggaacaggcaaaacagcttgtgaaagccgaaatggaagccaccggcgcggcgttg
ggtctctcggtgccgctgaaagtcgatctgggcgtggggttgaactggcgagtcgcccat
ccctag
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integrated database retrieval system
