Niabella defluvii: KRR40_31250
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Entry
KRR40_31250 CDS
T10250
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ndf Niabella defluvii
Pathway
ndf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KRR40_31250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndf03019
]
KRR40_31250
03009 Ribosome biogenesis [BR:
ndf03009
]
KRR40_31250
Enzymes [BR:
ndf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KRR40_31250
Messenger RNA biogenesis [BR:
ndf03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KRR40_31250
Ribosome biogenesis [BR:
ndf03009
]
Prokaryotic type
rRNA helicases
KRR40_31250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
AAA_22
Helicase_RecD
YwpF
Motif
Other DBs
NCBI-ProteinID:
ULT46440
LinkDB
All DBs
Position
3998542..4000092
Genome browser
AA seq
516 aa
AA seq
DB search
MPVLLQGTKDFVGLAQTGTGKTAAFGLPLLQLIDKEQRTPQALVICPTRELCLQITTDLE
RFAQKGRISVTAVYGGTSITQQVRDLKRGTHIVVATPGRLIDLIERKAVHLEDINYVVLD
EADEMLNMGFKEDIEFILKETVNRHSMWLFSATMPPEIRSVSKRFMDTPAEISVGKVNST
NVNIDHQYFLTQHVNRYETLKRIIDFNPGIYGIIFTRTKADAQQITEQLIREGYDIDALH
GDLTQAQRDKVMGRFREKSLELLIATDVAARGIDVKGITHVINYELPDDTEVYTHRSGRT
GRAGRSGVSISVVTPKEVYRLRQIEKLVNTKFHKMDIPSGKDVCRKQFFHFIDKMLQADI
SHGEYETYLPVLKEKFEGVEKEEILQRVAALEFDRFLKYYENAADLNQRTDRDSKAPRER
QGGKGFSRNGNYQRLFVNLGTKDGFYKASFLQFILDMSGLSKDVLGSIDMKEMNSWVEIE
PNAGKKMIKAIDGKNYRGRKIRMNDAASGGGGRRRQ
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
attcccgttttattacaaggcactaaagattttgtaggtttagcacaaacaggtaccggt
aaaacagcggcttttgggttgcccttattgcaattgattgataaggaacaacgtacgcca
caggcgttggtgatttgccccacacgtgaactttgtttacaaattacaaccgacctcgag
cgctttgcacaaaagggaaggatttcggttaccgccgtttatggtggaacctctattaca
caacaggtacgcgacctcaaaagaggtacccatatcgtagtagccactcccggcaggtta
atcgacctgatcgagagaaaggcagtacatctcgaagatattaactatgtagtattggac
gaagccgatgaaatgctgaatatgggcttcaaggaagatattgagtttatccttaaagaa
actgttaaccgccatagtatgtggttgtttagcgccactatgcctcctgagatcaggagc
gtaagtaagcgctttatggatacgcctgccgagatatcggtaggtaaggttaactctacc
aatgtaaatattgatcaccagtatttcttaacgcaacatgtaaaccgttatgagacgtta
aaacgtattatcgattttaaccccggcatatacggtattatttttacccggaccaaggct
gacgcgcaacagatcacagaacaactgatcagggaaggttatgatattgatgcgttacat
ggcgatctcacccaggcacagcgtgataaagtgatgggccgtttccgtgaaaaatcgctc
gaactgttaattgcaaccgacgttgcggcacgtggtattgatgtaaaaggcattactcat
gtgatcaattatgagcttcccgacgatacggaagtgtatacgcaccgcagtggccgaacc
ggaagggcagggagaagtggtgtatccatttcggtagttacaccgaaggaagtatatcgc
ttaagacaaatagaaaaactggttaataccaaatttcataaaatggatattcccagtggt
aaagatgtttgccgcaaacagtttttccattttatagacaaaatgctacaggctgatatc
agccatggcgaatatgaaacctacctgcccgtattaaaagaaaagtttgaaggagtagag
aaggaagagatcttacagcgggtagctgctctggagtttgacaggttcttaaagtactac
gaaaatgctgccgatctgaaccagcgtactgaccgcgatagcaaggcgccgcgcgagagg
cagggcggtaaaggtttttcaagaaatggtaactaccagcgtttatttgtgaacctgggt
accaaagatggtttttacaaggccagcttcctgcagtttattttggatatgagcggtttg
agtaaagacgtgctgggcagtatcgatatgaaagaaatgaatagctgggtagaaatagag
cctaatgcgggtaaaaaaatgatcaaagctatcgacggtaagaattacaggggcagaaag
atcaggatgaatgacgcagcctcaggcggcggcgggcgcagacggcaatag
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