Nocardioides dokdonensis: I601_0394
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Entry
I601_0394 CDS
T04431
Symbol
hrpB_1
Name
(GenBank) ATP-dependent RNA helicase HrpB
KO
K03578
ATP-dependent RNA helicase HrpA [EC:
5.6.2.6
]
Organism
ndk
Nocardioides dokdonensis
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndk03019
]
I601_0394 (hrpB_1)
Enzymes [BR:
ndk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
I601_0394 (hrpB_1)
Messenger RNA biogenesis [BR:
ndk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
I601_0394 (hrpB_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3418
OB_NTP_bind
Helicase_C
HA2_C
DEAD
AAA_22
AAA_19
HA2_N
AAA_25
nSTAND3
NACHT
T2SSE
SLFN-g3_helicase
PhoH
AAA_16
ABC_tran
TsaE
Motif
Other DBs
NCBI-ProteinID:
ANH36846
UniProt:
A0A1A9GFK8
LinkDB
All DBs
Position
complement(414166..418029)
Genome browser
AA seq
1287 aa
AA seq
DB search
MDAPLEISYPPELPVTQRRDDIAEAIRDHQVVVVAGETGSGKTTQLPKICLELGRGRPTM
HTARDGKERRRGGLIGHTQPRRIAARSVAERIADELGQSLGEDSVVGYQVRFTDRTTRST
RVKLMTDGILLAELQRDRMLWKYDTIIIDEAHERSLNIDFLLGYLKRLLPRRPDLKLVIT
SATIDVERFAAHFADRDGTPAPVVEVSGRTYPVEVRYRPLLDLGEDDEDGEPVQRDQTEA
IVDAVRELSAEGPGDILVFLPGEREIRDTADALHDLTTTTRGGGTEVVPLYSRLSAAEQH
RVFSSHTGRRIVLATNVAETSLTVPGIRYVVDAGVARISRYSARTKVQRLPIEPISQASA
NQRSGRCGRVAAGVAIRLYSEEDFEGRPEFTDPEILRTNLASVILQMTSLRLGDVADFPF
VEPPDRRNVASGVQLLEELGALTVAPGREERRLTGLGQRLARLPLDPRLGRMILEAERLG
CLREVLVITAALSLQDPRERPAEMQAQADQQHARFKADDSDFLTWLNLWRYVKEQQKELS
SSAFRRMCKREFLNYLRVREWQDFESQLRTVCKEMGVDVGHPADLPDADGIHQALLSGLL
SQIGLLEERDKPAPGAKAAKGRRPMREYVGARGARFAIFPGSGLARKNPAYVMAGELVET
GRLWARQVAAIDPAWAERLGGDLVKRTWSEPHWSTKRAAVMAYERATLYGVPLVADRLVS
YGKVDVEVARELFIRHALVQGEWRTQQKFLERNRRRLEEAAELEHRARRRDIVVDEETLF
DFYDARVGPEVVSGAHFDQWWKQERQRDGRLLDFDPSMLTHDTAEEVREDDYPEQWHGEG
LTFPIAYHFEPGAADDGLTIDVPVATLNRVAADDFSWNVPGLREELVTSLIRSLPKNLRV
TFVPAPDKARDFLRATPPGEEPLLDALERWCRATGGVVVPREAWDWAKVPEHLRPTYRVV
DDRGREQARGKDLEALKAPLRGQFTQALAEVASDSGLARTGETTWVFGDLEASFTQKRAG
HEVTAYPGLVDEGATVGLQVAGSEDERDARHRLGVRRLLLLDLDRRGDSSVRRVLDGLGN
AEKLGLAGSPYPSVAELLEDCRAAVVQAAVDGRAPVRDQAAYDALLALVGADLQAHLRGV
LADVVRVLDAWRRAEKVLSGRADMHMLTALTDMRAQLGRLVHRGFISEAGPSRLRRYPTY
LQALLQRREKLDTGGLAIGADRQLMDRIADLQGAWLHQVDALPEGRPPGERLRRVRWMLE
EYRVSLWAQQLGTDGPVSDQRIRKVLA
NT seq
3864 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgccgctcgagatctcctacccgcccgagctccccgtcacccagcggcgcgac
gacatcgccgaggcgatccgggaccaccaggtcgtggtcgtggccggcgagaccgggtcg
ggcaagaccacgcagctgccgaagatctgcctcgagctgggccggggccggcccaccatg
cacaccgcgcgggacggcaaggagcgccgtcgcgggggcctgatcgggcacacccagccc
cgccggatcgccgcgcgctcggtcgcggagcggatcgccgacgagctcggccagtcgctg
ggcgaggactcggtggtcggctaccaggtccggttcaccgaccgcacgacgcgctcgacg
cgggtcaagctgatgaccgacggcatcctgctcgccgagctgcagcgcgaccggatgctg
tggaagtacgacacgatcatcatcgacgaggcgcacgagcggtcgctgaacatcgacttc
ctgctcggctacctcaagcggctgctgccgcggcgtcccgacctcaagctggtcatcacg
tcggcgaccatcgacgtggagcgcttcgccgcccacttcgccgaccgcgacggcacgccc
gccccggtcgtcgaggtctccgggcgcacctaccccgtcgaggtgcgctaccggccgctg
ctcgacctcggcgaggacgacgaggacggcgagccggtccagcgcgaccagaccgaggcg
atcgtcgatgccgtgcgcgagctgagcgccgaggggcccggcgacatcctggtgttcctg
cccggggagcgcgagatccgcgacaccgccgacgcactgcacgacctgacgaccaccacc
cgcggcggcggcaccgaggtggtcccgctctactcgcggctctcggccgccgagcagcac
cgggtcttctcctcgcacaccgggcgccgcatcgtgctggccaccaacgtcgccgagacc
tcgctgacggtgcccggcatccgctacgtcgtcgacgccggtgtcgcgcggatctcgcgg
tactccgcgcgcaccaaggtgcagcggctgcccatcgagccgatcagccaggcctcggcc
aaccagcgctcgggccggtgcgggcgcgtcgcggcgggcgtggcgatccggctctactcg
gaggaggacttcgagggccgtccggagttcaccgaccccgagatcctgcgcaccaacctg
gccagcgtcatcctgcagatgacgagcctccgcctgggtgacgtcgcggacttcccgttc
gtggagccgccggaccgtcgcaacgtcgcctccggcgtgcagctgctcgaggagctcggt
gcgctgacggtcgccccgggccgggaggagcgtcggctgaccggcctcggccagcggctg
gcccgcctgcccctggacccgcggctgggccggatgatcctcgaggccgagcggctcggg
tgcctgcgggaggtgctggtcatcaccgccgcgctgagcctgcaggacccccgtgagcgg
cccgccgagatgcaggcgcaggccgaccagcagcacgcccggttcaaggccgacgactcc
gacttcctgacctggctcaacctgtggcgctacgtcaaggagcagcagaaggagctcagc
tccagcgcgttccgtcggatgtgcaagcgggagttcctcaactacctgcgggtgcgggag
tggcaggacttcgagtcccagctgcgcaccgtgtgcaaggagatgggcgtggacgtcggg
caccccgccgacctccccgacgccgacggcatccaccaggcgctgctctccgggctgctc
tcgcagatcgggctgctggaggagcgcgacaagcccgcccccggcgcgaaggccgccaag
ggccgccgcccgatgcgcgagtacgtcggcgcccgcggcgcccggttcgcgatcttcccg
ggcagcggcctggcgcggaagaacccggcgtacgtcatggccggcgagctcgtcgagacc
ggccgcctgtgggcccgccaggtggcggcaatcgacccggcctgggccgagcggctgggt
ggggacctggtcaagcgcacctggtccgagccgcactggagcaccaagcgtgcggcggtg
atggcctacgagcgcgccaccctctacggcgtgccgctggtcgccgaccggctcgtctcc
tacggcaaggtcgacgtcgaggtcgctcgcgagctgttcatccgccacgccctggtgcag
ggggagtggcgaacccagcagaagttcctcgagcgcaaccgccggcgactcgaggaggcc
gccgagctcgagcaccgggcgcggcgccgggacatcgtcgtcgacgaggagacgctcttc
gacttctacgacgcccgggtgggacccgaggtcgtcagcggcgcgcacttcgaccagtgg
tggaagcaggagcgccagcgcgacggccggctgctcgacttcgaccccagcatgctcacc
cacgacacggccgaggaggtgcgcgaggacgactaccccgagcagtggcacggggagggg
ctgaccttcccgatcgcgtaccacttcgagccgggcgccgccgacgacggcctgaccatc
gacgtgcccgtggccacgctcaaccgggtcgccgccgacgacttctcctggaacgtgccg
ggcctgcgcgaggagctggtcaccagcctgatccgcagcctgcccaagaacctgcgggtc
accttcgtgccggcccccgacaaggcccgcgacttcctgcgcgcgacgccaccgggggag
gagccgctgctcgacgccctcgagcgctggtgccgggccaccggcggcgtcgtggtgccg
cgcgaggcgtgggactgggccaaggtgcccgagcacctgcgccccacctaccgggtcgtc
gacgaccgcggccgcgagcaggcccggggcaaggacctggaggcgctcaaggcccccctg
cgcggacagttcacccaggcgctggccgaggtcgcctccgactccgggctggcgcgcacc
ggcgagaccacctgggtcttcggcgacctcgaggcgtccttcacccagaagcgtgccggc
cacgaggtcaccgcctacccgggcctcgtcgacgagggcgccacggtcgggctgcaggtc
gccggctccgaggacgagcgcgacgcccggcaccgtctcggcgtgcgccggctcctgctg
ctcgacctcgaccgccgcggtgactcctcggtgcgccgggtgctcgacgggctcggcaac
gccgagaagctcgggctcgccggatcgccctacccctcggtggccgagctgctcgaggac
tgccgggccgcggtggtccaggccgccgtcgacgggcgggcgcccgtgcgcgaccaggcg
gcgtacgacgccctgctggcgctcgtcggtgccgacctccaggcgcacctgcggggggtg
ctcgccgacgtggtccgggtcctggacgcctggcgccgcgccgagaaggtgctctcgggc
cgtgccgacatgcacatgctcaccgcgctcaccgacatgcgcgcccagctcgggcggctg
gtgcaccgcggcttcatcagcgaggccggacccagccgtctgcgccgctacccgacgtac
ctgcaggccctgctccagcgccgcgagaagctcgacaccggcggtctggcgatcggcgcc
gaccggcagctgatggaccgcatcgccgacctgcagggcgcctggctgcaccaggtcgac
gcgctccccgaggggcggccgccgggggagcggctgcgccgggtgcgctggatgctggag
gagtaccgcgtctcgctgtgggcccagcagctcggcaccgacggcccggtctccgaccag
cggatccgcaaggtcctggcctga
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