Nocardioides dokdonensis: I601_0723
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Entry
I601_0723 CDS
T04431
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
I601_0723 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndk03021
]
I601_0723 (rpoB)
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_0723 (rpoB)
Enzymes [BR:
ndk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
I601_0723 (rpoB)
Transcription machinery [BR:
ndk03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
I601_0723 (rpoB)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
I601_0723 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
FH2
Motif
Other DBs
NCBI-ProteinID:
ANH37173
UniProt:
A0A1A9GHU3
LinkDB
All DBs
Position
complement(744398..747871)
Genome browser
AA seq
1157 aa
AA seq
DB search
MAARTASAVSRANRRISFAKIAEPLEVPQLLSLQTDSFDWLVGNDKWTEEVERRRANGDD
VSEKSGLTEIFEEISPIEDFSETMSLSFENPVFYDPKYTVDECKEKDFTYSAPLYVSAEF
TNNDTGEIKGQTVFMGDFPLMTPKGTFVINGTERVVVSQLVRSPGVYFERSADKTSDKDI
YTAKLIPSRGAWLEFEIDKRDLVGVRLDRKRKQNVTVLLKALGWTNEQIREEFGQYESMM
LTLEKDHTETQKDALLDIYRKLRPGEPPTEEAAQTLLNNYYFNPKRYDLAKVGRYKINKK
LGLTEAFDQQTLTVDDVVAAIRYIVALHDGQDQVEAPSGPLDVASDDIDHFGNRRMRTVG
ELIQNQLRTGLARMERVVRERMTTQDVEAITPQSLINIRPVVAALKEFFGTSQLSQFMDQ
TNPIAGLTHKRRLSALGPGGLSRDRAGMEVRDVHPSHYGRMCPIETPEGPNIGLIGSLAS
YGRINPFGFVETPYRKVVEGQVTDQIDYLTADDEDRFVIAQANAVLDDDLRFVNERVLVR
TRDGEVSEILAGEIDYMDVSPRQMVSVATALIPFLEHDDANRALMGANMQRQAVPLIRSD
SPLVGTGMEYRAAVDAGDVVVAEKAGVVKDVSADLVETMNDDGSYSSYKLAKFRRSNQGT
CINQRPLVVEGDRLEVGSPIADGPCTDEAEMALGTNLLVAFMPWQGHNYEDAIILSQRLV
QEDVLTSIHIEEHEVDARDTKLGPEEITRDIPNISEEGLADLDERGIIRIGAEVVTGDIL
VGKVTPKGETELTPEERLLRAIFGEKAREVRDTSMKVPHGESGTVIGVRVFDREDGDELP
PGVNQLVRVYVAQKRKISVGDKLAGRHGNKGVIAKILPIEDMPFMEDGTPVDVVLNPLGV
PRRMNIGQILELHLGWLAQQGWDLDLAEDTSDTDWKQRLIKIHAEKAEPRTKVATPVFDG
AREDEIIGLLGSTIPNRDGVRMIDGTGKADLFDGRSGEPFPDPVSVGYMYILKLHHLVDD
KIHARSTGPYSMITQQPLGGKAQFGGQRFGEMEVWAMEAYGAAYALQELLTIKSDDVPGR
VKVYEAIVKGENIPDSGIPESFKVLVKEMQSLCLNVEVLSQDGTSIELRDAEEDVFRAAE
ELGIDLSRREPSSVEEV
NT seq
3474 nt
NT seq
+upstream
nt +downstream
nt
ttggccgcgcgcaccgcttccgccgtttctcgtgctaaccgccgcatctcgttcgcaaag
atcgccgaacccctcgaggttccccagctcctctctctccagaccgacagcttcgactgg
ctggtcggcaacgacaagtggaccgaggaggtcgagcgccgccgtgccaacggcgacgac
gtctccgagaagtccggtctgaccgagatcttcgaggagatctcgccgatcgaggacttc
agcgagaccatgtcgctctcgttcgagaaccctgtcttctacgaccccaagtacacggtc
gacgagtgcaaggagaaggacttcacctactccgcgccgctctacgtgtcggcggagttc
accaacaacgacaccggtgagatcaagggccagacggtcttcatgggcgacttcccgctc
atgacccccaagggcacgtttgtcatcaacggcaccgagcgcgtcgtcgtctcccagctg
gtccgcagcccgggcgtctacttcgagcgctccgcggacaagacgtccgacaaggacatc
tacaccgccaagctgatccccagccgcggcgcctggctcgagttcgagatcgacaagcgc
gacctcgtcggcgtccgcctggaccgcaagcgcaagcagaacgtcaccgtgctgctcaag
gccctcggctggaccaacgagcagatccgcgaggagttcggccagtacgagtcgatgatg
ctcacgctggagaaggaccacaccgagacgcagaaggacgcgctcctcgacatctaccgc
aagctgcgcccgggcgagccccccaccgaggaggccgcgcagaccctgctgaacaactac
tacttcaaccccaagcgctacgacctggccaaggtcggccggtacaagatcaacaagaag
ctcggtctgaccgaggccttcgaccagcagaccctgaccgtcgacgacgtcgtcgccgcg
atccgctacatcgtcgcgctgcacgacggccaggaccaggtcgaggcgccctcgggcccg
ctcgacgtggcctccgacgacatcgaccacttcggcaaccgtcggatgcgcacggtgggc
gagctgatccagaaccagctgcgcaccggtctggcgcgcatggagcgcgtggtccgtgag
cggatgaccacccaggacgtcgaggccatcacgccgcagtcgctgatcaacatccggccg
gtggtggcggcgctgaaggagttcttcggcacctcgcagctgagccagttcatggaccag
accaaccccatcgcgggcctgacgcacaagcgtcgcctgtccgcgctgggcccgggcggt
ctctcgcgcgaccgcgccggcatggaggtccgcgacgtgcacccgtcgcactacggccgc
atgtgccccatcgagacccctgaaggtcccaacatcggtctgatcgggtcgctggcctcc
tacggccgcatcaacccgttcgggttcgtcgagaccccgtaccgcaaggtcgtcgagggc
caggtcaccgaccagatcgactacctcaccgccgacgacgaggaccgcttcgtcatcgcg
caggccaacgccgtgctcgacgacgacctgcgcttcgtcaacgagcgcgtcctggtgcgc
acccgtgacggcgaggtctccgagatcctggccggcgagatcgactacatggacgtctcg
ccgcgccagatggtgtcggtcgcgaccgcgctcatcccgttcctcgagcacgacgacgcc
aaccgtgcgctcatgggcgccaacatgcagcgccaggccgtcccgctgatccgcagcgac
agcccgctggtcggcaccggcatggagtaccgcgccgcggtcgacgccggtgacgtggtc
gtcgcggagaaggccggagtcgtcaaggacgtctccgccgacctcgtcgagaccatgaac
gacgacggcagctactcgtcgtacaagctcgcgaagttccgccgctccaaccagggcacc
tgcatcaaccagcgtccgctggtcgtcgagggtgaccgcctcgaggtcggcagcccgatc
gccgacggcccctgcaccgacgaggccgagatggcgctgggcaccaacctgctcgtcgcc
ttcatgccgtggcagggtcacaactacgaggacgcgatcatcctctcccagcgcctggtg
caggaggacgtcctcacctcgatccacatcgaggagcacgaggtcgacgcccgcgacacc
aagctgggccccgaggagatcacgcgggacatcccgaacatctccgaggagggtctggcc
gacctcgacgagcgcggcatcatccgcatcggtgccgaggtcgtgaccggggacatcctg
gtcggcaaggtcacgcccaagggcgagaccgagctgacccccgaggagcgcctgctgcgc
gcgatcttcggcgagaaggcgcgcgaggtgcgcgacacctcgatgaaggtgccgcacggt
gagtccggcacggtcatcggcgtgcgcgtcttcgaccgcgaggacggcgacgagctgcct
ccgggcgtcaaccagctggtccgcgtctacgtggcccagaagcgcaagatctcggtgggc
gacaagctcgccggacgccacggcaacaagggtgtcatcgccaagatcctgccgatcgag
gacatgccgttcatggaggacggcaccccggtcgacgtcgtgctcaacccgctgggtgtg
ccgcgacggatgaacatcggtcagatcctcgagctccacctcggctggctggcccagcag
ggttgggacctcgacctcgccgaggacacctcggacaccgactggaagcagcggttgatc
aagatccacgccgagaaggcggagccgcgcaccaaggtcgcgactccggtcttcgacggt
gcgcgcgaggacgagatcatcggcctgctcggctcgacgatccccaaccgcgacggcgtg
cggatgatcgacggcaccggcaaggccgacctgttcgacggtcgctcgggcgagccgttc
ccggacccggtctcggtcggctacatgtacatcctgaagctgcaccacctcgtggacgac
aagatccacgcgcgcagcaccggcccgtactcgatgatcacgcagcagcccctgggcggc
aaggcccagttcggtggccagcggttcggcgagatggaggtctgggcgatggaggcgtac
ggcgccgcctacgccctgcaggagctgctgacgatcaagtccgacgacgtgcctggtcgc
gtcaaggtctacgaggcgatcgtcaagggcgagaacatccccgactccggcatcccggag
tcgttcaaggtgctcgtcaaggagatgcagtcgctgtgcctgaacgtggaggtcctctcc
caggacggcaccagcatcgagctgcgcgacgcggaggaagacgtcttccgcgccgccgag
gagctcggcatcgacctgtcgcgtcgcgagcccagctcggtcgaagaggtgtga
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integrated database retrieval system
