Nocardioides dokdonensis: I601_1196
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Entry
I601_1196 CDS
T04431
Symbol
deaD
Name
(GenBank) ATP-dependent RNA helicase DeaD
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I601_1196 (deaD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndk03019
]
I601_1196 (deaD)
03009 Ribosome biogenesis [BR:
ndk03009
]
I601_1196 (deaD)
Enzymes [BR:
ndk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
I601_1196 (deaD)
Messenger RNA biogenesis [BR:
ndk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
I601_1196 (deaD)
Ribosome biogenesis [BR:
ndk03009
]
Prokaryotic type
rRNA helicases
I601_1196 (deaD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DeaD_dimer
DbpA
ResIII
CMS1
UvrA_inter
HEM4
adh_short
Cas3-like_C_2
HTH_CLF_N
Motif
Other DBs
NCBI-ProteinID:
ANH37638
UniProt:
A0A1A9GH70
LinkDB
All DBs
Position
complement(1241082..1242959)
Genome browser
AA seq
625 aa
AA seq
DB search
MTSSGGLGTASPAGGDRAHREHEWKSDPPSDYRCKVTSPESETPTVEEQVPTFVELGLSE
QVLKALSDVGYETPSAIQAETIPTLLQGRDVVGLAQTGTGKTAAFALPILSNLDLSQKSP
QALVLAPTRELALQVCEAFEKYAARMKGVHVLPVYGGQAYGVQLSALRRGVHIVVGTPGR
IMDHLDKGTLDLSKLRFLVLDEADEMLNMGFAEDVETILAETPDDKQVALFSATMPTQIR
RLSKQYLRDPAEITVKRSARTAANITQRYLTVSYPQKVDALTRILEVENFEGMIVFVRTK
NETETLAEKLRARGYSAAAINGDIAQVQRERTVNQLKAGKLDILVATDVAARGLDVERIS
HVVNYDIPTDTESYVHRIGRTGRAGRTGDAISFITPRERYLLKHIEKATRQPLTQMQLPS
AEDVNSTRLTRFDDAITEALEQRDRIERFRDIVAHYVREHDVPEVDVAAALAVVAQGETP
LLLDADADRARAEREARRAPERPERGGRDERSGKARAERAPRRGGDVDLATYRISVGKRH
KVEPRQIVGALANEGGLSRGDFGKISIRPDFSLVELPAGLGPQVFAALADTRISGKLIEL
RADSGSSNDTWGDSSERKKPRHKKP
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcgagcggtgggctcggaacagcctccccagcagggggtgaccgagcccaccgc
gagcacgaatggaagagcgaccccccgagcgactaccgttgcaaggtgacttcccccgag
agtgagaccccgaccgtcgaggagcaggtgccgacgttcgtcgagctcggtctgtccgag
caggtgctgaaggccctgtccgacgtgggctacgagaccccgtcggccatccaggccgag
accatccccaccctcctgcagggtcgcgacgtggtcggcctggcgcagaccgggaccggc
aagaccgccgcgttcgcgctgccgatcctctccaacctggacctgtcgcagaagagcccg
caggcgctcgtgctggcccccacccgtgagctcgcgctccaggtgtgcgaggccttcgag
aagtacgccgcgcggatgaagggcgtgcacgtgctgcccgtctacggcggccaggcctac
ggcgtgcagctctcggcgctgcgccgcggcgtgcacatcgtcgtcggcaccccgggtcgg
atcatggaccacctcgacaagggcaccctcgacttgtcgaagctgcgcttcctggtgctc
gacgaggccgacgagatgctcaacatgggcttcgccgaggacgtcgagacgatcctggcc
gagacccccgacgacaagcaggtggcgctgttctcggccaccatgcccacgcagatccgt
cggctctccaagcagtacctccgcgatcccgccgagatcacggtcaagcgcagcgcgcgc
accgccgcgaacatcacccagcgctacctgaccgtgtcctacccgcagaaggtcgacgcg
ctcacccgcatcctcgaggtcgagaacttcgagggcatgatcgtgttcgtccggaccaag
aacgagaccgagaccctggccgagaagctgcgggctcggggctactcggccgccgcgatc
aacggtgacatcgcccaggtccagcgcgagcgcacggtcaaccagctcaaggccggcaag
ctcgacatcctggtcgccaccgacgtggccgcccgcggtctcgacgtcgagcgcatcagc
cacgtcgtcaactacgacatccccaccgacaccgagtcctacgtgcaccgcatcggtcgc
accggccgggccgggcgcaccggtgacgcgatctcgttcatcaccccgcgcgagcgctac
ctgctcaagcacatcgagaaggcgacccgccagccgctgacccagatgcagctgcccagc
gccgaggacgtcaacagcacccgcctgacccgcttcgacgacgccatcaccgaggcgctg
gagcagcgcgaccgcatcgagcgcttccgcgacatcgtggcccactacgtgcgcgagcac
gacgtgcccgaggtcgacgtggctgccgcgctggccgtcgtggcgcagggcgagacgccg
ctgctgctcgacgccgacgccgaccgggcccgcgccgagcgcgaggctcgtcgcgccccc
gagcgtcccgagcgtggcggtcgcgacgagaggtccggcaaggcccgcgccgagcgcgcc
ccccgccgcggcggcgacgtcgacctcgcgacgtaccggatctcggtgggcaagcggcac
aaggtcgagccccgccagatcgtcggcgccctggccaacgagggcggcctctcgcgcggc
gacttcggcaagatctcgatccggcccgacttctcgctcgtcgagctcccggccggactg
ggcccccaggtcttcgcggcgctggccgacacccgcatctccggcaagctcatcgagctg
cgggccgacagcggcagctcgaacgacacctggggcgacagctccgagcgcaagaagccc
cggcacaagaagccctga
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