Nocardioides dokdonensis: I601_1467
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Entry
I601_1467 CDS
T04431
Symbol
recB
Name
(GenBank) RecBCD enzyme subunit RecB
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
I601_1467 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_1467 (recB)
Enzymes [BR:
ndk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
I601_1467 (recB)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
I601_1467 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
UvrD_C_2
PDDEXK_1
AAA_30
Motif
Other DBs
NCBI-ProteinID:
ANH37903
UniProt:
A0A1A9GJW4
LinkDB
All DBs
Position
1528116..1531547
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AA seq
1143 aa
AA seq
DB search
MTTDFDVCAPTLPAPGTTTLLEASAGTGKTWTIGALVTRYVVEGVARLDDMLVVTFGRAA
SQELRERVRAQLVEAERALAGDPDVPAGSDLLRLLVGDGSDREVRHRRVLEALAGFDAAT
IATTHQFCALVLESLGVAGDTDSRARLVEDLDDLVREVVDDLYLRAFAFAETDPVFSHAD
ALAIARAAVRDPQARLEPADADRSTPVGRRVGFAEKVREELDLRKRRLGILSYDDLLLQL
SRALEAEDSPARTRMQERWSVVLVDEFQDTDPVQWEVLDRAFSGVATMVLIGDPKQAIYA
FRGGDVTTYLKAARTADRRESLGVNWRSDAALLAACQELLVGARLGDEQIVVHPVTAHHR
DRRLEGAPVEAPLRLRAVRRDTFARRPTTMLTVAQVRPHVARDLALDVRRLLASGATFDG
RELEPRDVAVISYRHADLAAAQRALVEVGVPAVIAGGGSVFATPAAVEWLTLLEALEQPH
RSSRVRAAALTCFVGRTAEEIDAGGGPEADRVTDEVADVLRRWVDLVARRGVAAVMEAAS
ASGMPARVLREIGGERRLTDLRHIGEALHETAQREHLGLVSLLAWLREQVAEGRAGRGAE
RTRRLDSDAAAVQLVTIHASKGLQYPVVYLPALADRFVPKPVRPLFHDDRGVRCLDVGGQ
RDAGAEGWGESVRRWADEEAGEWLRLLYVALTRAQGQVVCWWAPTKNATSSPLHRLLMRP
EGGPSVPDAPAVPGDDEVVTLFSAWAQRGGPVPEAALWGDPPPVPPRPEVGHLEARHFER
AVDTAWRRTSYSALTATLTAEPATGAAGLPGAGPAGSGAAVGSEPEVTPRDDEPDGPATA
NAPTAAPDEPGTAAPVPAELQLDSPMAALPVGATFGSLVHAVLEHTDPHAPDLHAELLGH
VVEQLVWWPVDVDPEALATALVAVCESPLGGAAPGLRLRDVGLRDRLREMDFELPLSGGD
LAPGAADDPAAQVRLGDLAPLLRRHLDDDDPVRGYATALEQPALGDQPLRGYLTGSVDVV
LRTPGSDGPRYVIVDYKTNWLGPIDEPLTAHAYRPEALDAAMVHSDYPLQALLYAVVLHR
FLRWRQPGYDPERHLGGVLYLYLRGMCGADTPWVDGEPCGVFRWTPPVALLEAVSDLLDG
GAP
NT seq
3432 nt
NT seq
+upstream
nt +downstream
nt
atgaccaccgacttcgacgtctgcgccccgacgctgccggccccgggcaccaccaccctg
ctcgaggccagcgcgggcaccggcaagacctggaccatcggcgcgctcgtgacccgctac
gtcgtcgagggcgtggcccggctcgacgacatgctcgtggtcaccttcggccgggccgcc
agccaggagctgcgcgagcgggtgcgggcccagctcgtcgaggccgagcgcgccctggcc
ggggaccccgacgtccctgccggcagcgacctgctgcgcctgctggtcggcgacggcagc
gaccgggaggtccggcaccggcgcgtcctcgaggcgctggccggcttcgacgccgccacc
atcgccaccacccaccagttctgcgccctggtgctggagtccctcggtgtcgccggtgac
accgactcccgggcccggctcgtcgaggacctcgacgacctggtgcgcgaggtggtcgac
gacctctacctgcgggccttcgccttcgccgagaccgaccccgtcttcagccacgccgac
gccctggcgatcgcccgggccgcggtccgcgacccgcaggcccgcctcgagcccgccgac
gccgaccggtccacgccggtcggccgccgggtcggcttcgccgagaaggtccgtgaggag
ctcgacctgcgcaagcgccggctcgggatcctgtcctacgacgacctgctgctccagctc
tcccgggcgctggaggccgaggactcgccggcgcgcacccgcatgcaggagcgctggagc
gtggtgctggtcgacgagttccaggacaccgacccggtgcagtgggaggtcctcgaccgg
gcgttcagcggcgtcgccacgatggtgctcatcggtgaccccaagcaggccatctacgcc
ttccgcggcggcgacgtcacgacgtacctcaaggcggcccgcaccgccgaccggcgcgag
agcctcggcgtcaactggcgcagcgacgccgccctgctggccgcctgccaggagctgctc
gtcggcgcccggctcggcgacgagcagatcgtggtgcacccggtgaccgcccaccaccgc
gaccgtcggctcgagggcgccccggtcgaggcgccgctgcggctgcgcgcggtgcgccgc
gacaccttcgcccgccggcccaccacgatgctcaccgtcgcgcaggtgcgcccgcacgtc
gcgcgcgacctggccctcgacgtacgccgcctgctcgcctcgggcgccaccttcgacggc
cgggagctggagccgcgcgacgtcgcggtcatctcctaccgccacgccgacctggccgcg
gcccagcgcgcgctcgtcgaggtcggtgtcccggccgtgatcgccggcgggggcagcgtc
ttcgccaccccggcggccgtggagtggctgaccctgctcgaggcgctcgagcagccgcac
cgcagcagccgggtgcgcgccgctgcgctgacctgcttcgtgggccgcaccgccgaggag
atcgacgccgggggcgggccggaggccgaccgggtcaccgacgaggtcgccgacgtgctg
cgtcgctgggtcgacctggtcgcccggcgtggcgtggccgcggtgatggaggcggcctcg
gcgtccgggatgccggcgcgggtgctgcgcgagatcgggggcgagcgtcgcctcaccgac
ctgcgccacatcggcgaggcgctgcacgagaccgcccagcgcgagcacctcgggctcgtc
tcgctgctcgcctggctgcgcgagcaggtggccgagggtcgcgcgggccgcggcgcggag
cgcacccgccggctcgactccgacgcggccgccgtgcagctggtgaccatccacgccagc
aaggggctgcagtaccccgtcgtctacctgccggccctggccgaccgcttcgtgcccaag
ccggtgcggcccctcttccacgacgaccgcggcgtgcgctgcctcgacgtcggcggccag
cgcgacgccggcgccgagggctggggcgagagcgtgcggcgctgggccgacgaggaggcc
ggcgagtggctgcggctgctctacgtcgcgctgacccgcgcccagggccaggtcgtgtgc
tggtgggcgccgaccaagaacgcgacgtcctccccgctgcaccgcctgctgatgcggccc
gagggcggcccgagcgtgcccgacgcgcccgcggtgcccggcgacgacgaggtcgtcacc
ctgttctccgcctgggcgcagcggggcgggccggtgccggaagcggccctgtggggcgac
ccgccgccggtgccgccgcgacccgaggtcggccacctggaggcccggcacttcgagcgc
gccgtcgacaccgcgtggcggcggacgtcgtactccgcgctcaccgcgacgctgaccgcc
gaaccggccaccggcgccgccggtctccccggcgcggggcccgccgggtccggtgccgcg
gtcggcagcgagcctgaggtcaccccgcgcgacgacgagcccgacggcccggcgacggcg
aacgcccccaccgcggcgccggacgagcccggcaccgccgcacccgtgcccgccgagctg
cagctcgactccccgatggccgcgctgccggtcggcgcgaccttcgggtcgctggtccac
gccgtgctcgagcacaccgacccgcacgcccccgacctgcacgccgagctcctcgggcac
gtcgtcgagcagctcgtgtggtggcctgtcgacgtcgaccccgaggcgctcgccacagcg
ctggtcgcggtgtgcgagtcaccgctgggcggtgccgcgccggggctgcggctgcgggac
gtcggcctgcgcgaccggctgcgcgagatggacttcgagctgcccctctccggcggcgac
ctggcccccggcgcggcggacgacccggccgcgcaggtgcgcctcggcgatctcgcgccg
ctgctgcgccggcacctggacgacgacgacccggtgcgcggctacgccaccgcgctcgag
cagccggcgctgggcgaccagcccctgcggggctacctgacggggtcggtcgacgtggtc
ctgcgcaccccggggtccgacggcccgcgctacgtgatcgtcgactacaagaccaactgg
ctggggcccatcgacgaacccctcaccgcgcacgcctaccgtcccgaggcgctcgacgcc
gcgatggtgcactccgactaccccctccaggcactgctctacgccgtggtgctgcaccgc
ttcctgcgctggcgccagcccgggtacgaccccgagcggcacctgggcggggtgctctac
ctctacctgcgcggcatgtgcggcgcggacacgccctgggtcgacggcgagccctgcggc
gtcttccgctggaccccgcccgtggccctgctggaggccgtctcggacctgctcgacgga
ggcgccccgtga
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