Nocardioides dokdonensis: I601_1972
Help
Entry
I601_1972 CDS
T04431
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
I601_1972 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_1972 (mfd)
Enzymes [BR:
ndk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
I601_1972 (mfd)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
I601_1972 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
ResIII
Cas3-like_C_2
AAA_22
UB2H
RecG_dom3_C
MFD_D3
Motif
Other DBs
NCBI-ProteinID:
ANH38401
UniProt:
A0A1A9GLP3
LinkDB
All DBs
Position
2059507..2063136
Genome browser
AA seq
1209 aa
AA seq
DB search
MSTTTTDVHLAPGPAGIADAVLADPTLLDVLSDAGEGRVRALDLTGPEALRPFVIAGLVR
AGRTVLAVTATSREADDLVTALGDLLDPHTVASYPSWETLPHERLSPRSDTVGRRLAVLR
RLQHPGTDPSNGPLQVVVAPVRSILQPQVKGLGDLEPVELVPGATAPLDDLVQRLADAAY
SRVDLVERRGEFAVRGGILDVFPPTEEHPLRVELWGDEVEEIRSFSVADQRTLEPVERLW
APPCRELLLTDEVRRRAAALGQAHPQLLELTDKMAQGIAVEGMESLAPVLVDDMELLVDL
MPPDTHVLVLDPERARRRAHDLVATSEEFLGASWAAAASGGSAPIDLGAASYRSLADVRE
HTLGQHKPWWTVSPFGIDVEGADSPVLRDEAGAITGIDVDVTVGAVPSRALSAKPVDAYR
GDVERAIADLDTWRSEGYRVLVLHEGHGPAQRMVEALAEHDVPARLVEPHTGGDDARMGP
DVVTVTCGGLSHGFVDETNRLVLLTGEDLSGQKSSTRDMRKMPTRRKKQIDPLELKSGDF
VVHEQHGVGRFVEMKQREVGGATREYLVLEYGASKRGGPADRLYVPADALDQVTRYVGGE
HPSLDRLGGGDWAKRKGRARKAVREIAAELIKLYAARQATQGHAFGPDTPWQRELEDAFP
FQETQDQLTTVDEVKADMRRVIPMDRLVCGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPT
TLLVTQHLSTFSERMAGFPVVLRGLSRFQTDKEAKEVLAGLADGSVDIVVGTHRLLNPDT
RMKDLGLIVVDEEQRFGVEHKEQMKRLRTSVDVLSMSATPIPRTLEMAITGIREMSTITT
PPEERHPVLTYVGAYEDRQVTAAVRRELLREGQVFYIHNRVQSIEKAAARIRELVPEARV
ATAHGQMGEQQLERVMLDFWEKSFDVLVCTTIVESGLDVSNANTMIIERSDTLGLSQLHQ
LRGRVGRSRERAYAYFLYPTEKPLTETAHERLATLAQHSDLGGGMAIAMKDLEIRGAGNL
LGGEQSGHIADVGFDLYVRLVGEAVAEFKGDGGEPELNEVRIELPVDAHLPHDYIGTERL
RLEIYKRLAEVRTDEDVDAINEELLDRYGEPPIEVVSLLLVARFRARARQAGIAEVTIAG
KNVRFAPVSLPESRQVRLQRMYPKSLIKPQTDTILVPRPQTAVIGGRPIDGIALLEWARQ
VIDQVIDPS
NT seq
3630 nt
NT seq
+upstream
nt +downstream
nt
gtgtcgaccacgaccaccgatgtccacctcgcccccggccccgccgggatcgccgacgcg
gtgctcgccgacccgaccctgctcgacgtgctctccgacgcgggggagggccgggtccgc
gcgctcgacctgaccggtcccgaggcgctgcgcccgttcgtgatcgccgggctggtgcgc
gccggacgcacggtgctcgccgtgaccgccacgtcgcgggaggccgacgacctcgtcacc
gccctgggcgacctgctcgacccgcacaccgtggcctcctacccgtcgtgggagaccctc
ccgcacgagcggctcagcccgcgctccgacaccgtcgggcgccgcctggccgtgctgcgc
cgcctgcagcaccccggcaccgaccccagcaacggcccgctccaagttgtcgtcgccccg
gtccgctcgatcctccagccgcaggtcaaggggctcggcgacctcgagccggtcgagctg
gtccccggggccaccgcgcccctcgacgacctggtccagcgcctggccgatgcggcgtac
tcgcgcgtcgacctcgtcgagcgccgcggcgagttcgcggtccgcggcggcatcctcgac
gtgttcccgcccaccgaggagcacccgctgcgcgtggagctgtggggcgacgaggtcgag
gagatccgctcgttctccgtcgccgaccagcgcaccctcgagcccgtcgagaggctctgg
gcgccgccgtgccgcgagctgctgctcaccgacgaggtacgccgccgcgccgccgccctg
ggccaggcccacccgcagctgctcgagctcaccgacaagatggcccagggcatcgccgtc
gagggcatggagtccctcgccccggtcctggtcgacgacatggagctcctcgtcgacctg
atgccccccgacacccacgtcctggtgctcgaccccgagcgggcgcgccgccgcgcccac
gacctggtcgccacgagcgaggagttcctgggcgccagctgggccgcggccgcgagcggc
ggcagcgcgccgatcgacctcggggcggcgtcgtaccgcagcctggccgacgtgcgcgag
cacaccctgggccagcacaagccctggtggacggtgagccccttcgggatcgacgtcgag
ggcgcggactcaccggtgctgcgcgacgaggccggcgccatcaccggcatcgacgtcgac
gtgaccgtgggcgcggtgccgagccgggccctgtcggccaagccggtcgacgcctaccgc
ggcgacgtcgagcgcgccatcgccgatctcgacacctggcgctcggagggctaccgggtg
ctggtgctgcacgagggccacggccccgcgcagcggatggtcgaggcgctggccgagcac
gacgtgccggcccggctcgtcgagccgcacaccggcggcgacgacgcccggatgggtccc
gacgtcgtcaccgtgacctgcggtgggctctcccacggcttcgtggacgagaccaaccgc
ctggtgctgctgaccggcgaggacctgtcggggcagaagtcctccacgcgcgacatgcgc
aagatgcccacccggcgcaagaagcagatcgaccccctcgagctgaagtccggcgacttc
gtggtgcacgagcagcacggcgtgggccgcttcgtggagatgaagcagcgcgaggtcggc
ggcgccacccgcgagtacctcgtcctcgagtacggcgcctccaagcgcggcgggcccgcc
gaccggctctacgtgccggccgatgcgctcgaccaggtcacccgctacgtcggcggcgag
caccccagcctcgaccgcctcggcggcggcgactgggccaagcgcaagggccgggcccgc
aaggcggtgcgcgagatcgccgccgagctgatcaagctgtacgccgcgcggcaggccacc
cagggccacgccttcggcccggacacgccctggcagcgcgagctcgaggacgcgttcccg
ttccaggagacccaggaccagctgaccaccgtcgacgaggtcaaggccgacatgcgccgg
gtgatcccgatggaccggctggtctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgcgcggcgttcaaggccgtccaggacggcaagcaggtcgcggtgctggtgcccacg
acgctgctggtcacccagcacctctccaccttcagcgagcggatggccggcttcccggtc
gtgctcaggggcctgtcgcgcttccagaccgacaaggaggccaaggaggtcctggccggg
ctggccgacggcagcgtcgacatcgtggtgggcacccaccggctgctcaaccccgacacc
cggatgaaggacctcgggctgatcgtcgtcgacgaggagcagcgcttcggcgtcgagcac
aaggagcagatgaagcggctgcgcacctccgtcgacgtgctgtcgatgagcgcgacgccg
atcccgcgcaccctcgagatggcgatcaccggcatccgggagatgtccacgatcaccacc
ccgcccgaggagcggcacccggtgctgacctacgtcggcgcctacgaggaccgccaggtg
accgccgccgtacgccgcgagctgctgcgcgagggccaggtcttctacatccacaaccgg
gtccagtcgatcgagaaggccgcggcgcggatccgtgagctggtgcccgaggcgagggtc
gccaccgcgcacggccagatgggcgagcagcagctcgagcgggtgatgctcgacttctgg
gagaagagcttcgacgtgctggtgtgcaccacgatcgtggagtccggcctcgacgtctcc
aacgccaacacgatgatcatcgagcgctccgacaccttgggcctctcccagctgcaccag
ctgcgcgggcgggtgggccgctcgcgcgagcgggcctacgcctacttcctctacccgacc
gagaagccgctcaccgagaccgcgcacgagcggctggccaccctggcccagcactccgac
ctcggtggcggcatggccatcgcgatgaaggacctcgagatccgcggcgccggcaacctg
ctgggcggtgagcagtccggtcacatcgccgacgtcgggttcgacctctacgtgcgcctg
gtcggcgaggcggtcgccgagttcaagggcgacggcggtgagcccgagctcaacgaggtg
cgcatcgagctgcctgtcgacgcccacctgccgcacgactacatcggcaccgagcggctg
cgcctggagatctacaagcggctcgccgaggtgcgcaccgacgaggacgtcgacgcgatc
aacgaggagctgctcgaccgctacggcgagccgccgatcgaggtcgtctcgctgctgctc
gtcgcgcgcttccgcgcccgggcccgtcaggccggcatcgcggaggtgaccatcgcgggc
aagaacgtccgcttcgcgccggtcagcctgcccgagtcgcgccaggtgcgcctgcagcgg
atgtacccgaagtcgctgatcaagccccagaccgacacgatcctggtgccgcgcccgcag
accgcggtcatcggtgggcgaccgatcgacggcatcgcgctgctcgagtgggcccgccag
gtcatcgaccaggtgatcgacccgtcctga
DBGET
integrated database retrieval system
