Nocardioides dokdonensis: I601_2208
Help
Entry
I601_2208 CDS
T04431
Name
(GenBank) Putative DNA ligase-like protein
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
I601_2208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_2208
Enzymes [BR:
ndk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
I601_2208
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
I601_2208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
ANH38633
UniProt:
A0A1A9GM09
LinkDB
All DBs
Position
2298766..2299713
Genome browser
AA seq
315 aa
AA seq
DB search
MPPPRPMLATKTDTVPVGADWSHEVKWDGVRILADRADRGAGGATRLWSRNANEVGVAWP
DVVDSAVGSRDLLVDGEVIVLNEAGVPDFRVLQERLHVRRARTAEHLAGTLPATFMVFDL
LRLDGTDLTALPLHERRARLADLDLGRWQVPPAYDDGAMLHAATHQQGLEGVVSKRLDSR
YTFERRSPHWLKLAHRHRRSYVVGGWRPQEGTSDRLAALLVGEPTPQGLAYRGRVGSGIG
ARTSRQLAELVAGLARGSSPFDDEVPGIDARGTHWVEPVLVVDVDTHGTGHARLRQPSYR
GLREDLVPADLPDQS
NT seq
948 nt
NT seq
+upstream
nt +downstream
nt
gtgcccccgccgcgcccgatgctcgccaccaagaccgacaccgtgcccgtgggtgcggac
tggtcgcacgaggtgaagtgggacggcgtgcggatcctggccgaccgggctgatcggggc
gccggcggcgcgacgaggctgtggagccgcaacgccaacgaggtcggggtcgcctggccc
gacgtcgtcgacagcgccgtgggctcccgcgacctgctcgtcgacggcgaggtgatcgtg
ctcaacgaggccggtgtccccgacttccgggtcctccaggagcgcctgcacgtacgccgc
gcccgcaccgccgagcacctggccggcaccctgccggcgacgttcatggtcttcgacctg
ctgcgcctcgacggcaccgacctgaccgccctgccgctccacgagcggcgcgcccgcctc
gccgacctcgacctcgggcgctggcaggtgccgccggcgtacgacgacggggcgatgctg
cacgccgccacgcaccagcaggggctcgagggcgtggtcagcaagcggctcgactcccgc
tacaccttcgagcggcgcagcccgcactggctcaagctggcccaccggcaccgccgctcc
tacgtggtcggcgggtggcgtccccaggaggggaccagcgaccggctggccgccctgctg
gtgggggagccgaccccgcaggggctggcctaccggggtcgggtcggcagcggcatcggc
gcgcggacctcgcggcagctcgcggagctggtggcgggcctggcccggggttccagtccc
ttcgacgacgaggtgcccgggatcgatgcccggggcacgcactgggtcgagccggtgctg
gtcgtcgacgtcgacacccacggcaccggtcacgcacggctgcgccaaccgtcctaccgc
ggactgcgcgaggacctcgtccctgccgacctgccggaccagtcctga
DBGET
integrated database retrieval system
