Nocardioides dokdonensis: I601_2406
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Entry
I601_2406 CDS
T04431
Symbol
rng
Name
(GenBank) Ribonuclease G
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I601_2406 (rng)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndk03019
]
I601_2406 (rng)
03009 Ribosome biogenesis [BR:
ndk03009
]
I601_2406 (rng)
Enzymes [BR:
ndk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
I601_2406 (rng)
Messenger RNA biogenesis [BR:
ndk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I601_2406 (rng)
Ribosome biogenesis [BR:
ndk03009
]
Prokaryotic type
rRNA processing factors
I601_2406 (rng)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
Motif
Other DBs
NCBI-ProteinID:
ANH38824
UniProt:
A0A1A9GKM3
LinkDB
All DBs
Position
2504933..2508475
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AA seq
1180 aa
AA seq
DB search
MPDENQVGQEPTTSEVPTAESGAAAQETAAPKVTTTTRTRKSTAKAPAKKSATKKSTAKA
ATPTDEPGEAQLDLGEVEAAPAKKAAAKKAPAKKAAAKKAPAKKAAAKPAEDQGVDAAAA
EAPTSTRTTTTTRAARKSPAKKTAAAAEETPVPATVAPEARTEPTTEPTTEPVVEAGAGV
APLFQAPAVTTTTRKRTAKKVAPAKVAEPVVPAEDEDEADEAAPAVQESSTPARTTTTTT
TRRTRGTAAAKAAAATQSGEQADEQAAEKAPEKAAEKPAAKTRNDDRNRDSSVDQDDDSD
DDDENDDDETGGQGSGTGRRRRRRGGRRRRKSGDGGDGGQQDSDDSSGSTDTADASESGT
PNGGGNSGGNGGGNGGGGRQGGGRDGNRGGSSAAKEKAENDNGPGNGPGDDEQDGDENGG
STSSRRRRRRRRSGEDGGDGGDDPSNTVTRVRSSRTGEDQITALSGSTRLEAKKQRRREG
REAGRRRAPIASEAEFLARREAVDRVMVIRQREDLTQIGVLEDKVLVEHYVARESQTSLI
GNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVNWAALGHKEGQPRKMESVLSSGQSV
LVQVTKDPMGHKGARLTSQVSLAGRFLVYVPDGTSSGISRKLPDTERARLKALLKEIVPD
SAGVIVRTAAEGASEEELTRDVERLKARWDDIEKKAKGNGPQLLYGEPDLTLKVVRDLFT
EDFAKLVIDGDEAWETVSDYVSHVAPDLQERLERFEPATEGKQAGKDAFAAHRIDEQIAK
GLDRKVFLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRL
RDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDRTRHQVAEVTSLGLIQMTRKRIGTGL
LEAFSEPCEHCSGRGILTLDHPVEPKHDDDGRRGGGGGGNSSGGGNSGSSSRRSRGGKGG
GNDSDAGNDGGRGGRGGGKGGSSDDTSATKAPSPKDVAAMARHENAEQDAASAPAEQQKA
AEQDQPTGQDQPAEPEQPQKSTRTRSRRAPQNEKAQNEKAQTEKVQADEVQPVAEPETVP
VPDEAHKGADSQPTGSSGSAEPAQQPAAPAEQDSGQDAAGAPGTRVVTRTRRRAATRPAG
QPTTAGEPVVMTAPDVVPAPEAAAAPATTAPKVVTRTRKR
NT seq
3543 nt
NT seq
+upstream
nt +downstream
nt
atgcccgacgagaaccaggtcggccaggagccgaccacctccgaggttcccaccgctgag
agcggtgcggccgcgcaggagactgcggcgccaaaggtcaccaccacgacccgcacccgc
aagagcaccgccaaggcgccggccaagaagtcggcgaccaagaaatcgaccgccaaggcc
gccaccccgaccgacgagccgggcgaggcccagctcgacctcggcgaggtcgaggccgcg
ccggcgaagaaggccgctgccaagaaggccccggccaagaaggccgctgccaagaaggcg
ccggccaagaaggctgccgccaagcccgccgaggaccagggtgtcgacgcggccgccgcc
gaggcgccgaccagcacgcgcaccaccaccacgacccgggcggcgcgcaagagccccgcg
aagaagacggccgccgccgcggaggagaccccggtgcccgcgaccgtggcccccgaggcc
cggaccgagcccaccaccgagcccaccaccgagcccgtggtcgaggccggcgccggtgtg
gcgccgctgttccaggcgcccgccgtgacgaccacgacccgcaagcgcaccgccaagaag
gtcgcgcccgccaaggtcgccgagcccgtcgtgcccgccgaggacgaggacgaggccgac
gaggcggcgcccgcggtccaggagagcagcacgcccgcgcgcaccaccacgacgaccacg
acgcggcgcacccgagggacggcggcggccaaggccgctgcggccacgcagtccggtgag
caggccgacgagcaggccgcggagaaggccccggagaaggccgcggagaagccggccgcg
aagacccgcaacgacgaccggaaccgcgacagcagcgtcgaccaggacgacgacagcgac
gacgacgacgagaacgacgacgacgagaccggtgggcagggctcgggcacgggccggcgc
cggcgccggcgcggcggtcgacgccgccgcaagtccggcgatggcggcgatggcggccag
caggactccgacgactcctcgggctccaccgacactgcggacgcctccgagagcggcacc
cccaacggcggcggcaacagcggcggcaacggcggcggcaacggtggcgggggtcgccag
ggtggcggccgcgacggcaaccggggcggttcgtcggcggccaaggagaaggccgagaac
gacaacggccccggcaacggacccggcgacgacgagcaggacggcgacgagaacggtggc
agcaccagctcgcggcgccgtcggcgtcgtcgccgctcgggtgaggacggcggcgacggc
ggggacgacccgagcaacaccgtcacccgggtgcgcagctcgcgcaccggcgaggaccag
atcaccgcactgtccggctccacccggctcgaggcgaagaagcagcgtcgtcgcgagggc
cgcgaggccggtcgtcggcgcgcgccgatcgccagcgaggccgagttcctggcccgtcgc
gaggcggtcgaccgcgtcatggtcatccgccagcgcgaggacctgacccagatcggcgtc
ctcgaggacaaggtgctcgtcgagcactacgtggctcgcgagtcgcagacctcgctcatc
ggcaacgtctacctgggccgtgtgcagaacgtgctgccctccatggaggcggccttcatc
gacatcggcaagggtcgcaacgcggtcctgtacgccggcgaggtcaactgggccgcgctg
ggccacaaggagggccagccccgcaagatggagtcggtcctctcctccggccagtcggtg
ctggtgcaggtcaccaaggacccgatgggccacaagggcgcccggctcaccagccaggtc
agcctggccggccggttcctcgtctacgtgcccgacggcaccagcagcggcatctcgcgc
aagctgcccgacaccgagcgggcgcgactcaaggcactgctcaaggagatcgtcccggac
tccgccggcgtgatcgtgcgcacggccgccgagggcgccagcgaggaggagctgacccgc
gacgtcgagcggctcaaggcccgctgggacgacatcgagaagaaggccaagggcaacggg
ccgcagctgctctacggtgagcccgacctgaccctcaaggtcgtccgggacctcttcacc
gaggacttcgccaagctcgtcatcgacggcgacgaggcctgggagaccgtgagcgactac
gtcagccacgtcgccccggacctccaggagcgcctcgagcgcttcgagccggccaccgag
ggcaagcaggccggcaaggacgccttcgccgcgcaccgcatcgacgagcagatcgccaag
ggcctggaccgcaaggtcttcctgccctcgggcggctcgctggtcatcgaccgcaccgag
gcgatgacggtcgtcgacgtcaacaccgggaagttcaccggctcgggcggcaacctcgag
gagaccgtcaccaagaacaacctggaggcggccgaggaggtcgtgcgccagctgcggctg
cgcgacatcggcgggatcatcgtcgtcgacttcatcgacatggtgctcgagtcgaaccgc
gacctggtgctgcgccgcatggtcgagtgcctcggccgggaccggacccgtcaccaggtc
gcggaggtgacctcgctcggcctgatccagatgacgcgcaagcgcatcggcaccggactg
ctcgaggcgttcagcgagccctgcgagcactgctccggtcgcggcatcctcaccctcgac
cacccggtcgagcccaagcacgacgacgacggtcgccgcggcggcggcggtggtgggaac
agcagcggcggcggcaacagcggcagcagcagccgacgctcccgtgggggcaagggcggc
ggcaacgacagcgacgccggcaacgacggcggtcgcggcggcaggggtggcggcaagggc
gggtcgtccgacgacacctccgccacgaaggcgccctcgccgaaggacgtcgcggccatg
gcacgccacgagaacgccgagcaggacgccgcctccgcgccggccgagcagcagaaggcg
gccgagcaggaccagccgaccgggcaggaccagccggccgagccggagcagccgcagaag
tccacgcggacccgctcgcgccgtgcgccccagaacgagaaggcccagaacgagaaggcc
cagaccgagaaggttcaggccgacgaggtccagccggtcgccgagccggagacggttccg
gtgccggacgaggcgcacaaaggagccgactcgcagcccacggggtcgtcggggtcggct
gagccggctcagcagcctgctgcgccggccgagcaggacagtgggcaggacgcagcagga
gcccccggcacccgggtcgtgacccggacccgtcgtcgggccgccacgcgacccgcaggg
cagcccacgacggccggtgagccggtcgtcatgacggcgcccgacgtcgtaccggctccg
gaggcggctgcagcgcccgcgacgacggctcccaaggtcgtcacccgcacgcgcaagcgc
tga
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