Nocardioides dokdonensis: I601_2488
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Entry
I601_2488 CDS
T04431
Symbol
alkA
Name
(GenBank) DNA-3-methyladenine glycosylase 2
KO
K13529
AraC family transcriptional regulator, regulatory protein of adaptative response / DNA-3-methyladenine glycosylase II [EC:
3.2.2.21
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
I601_2488 (alkA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
ndk03000
]
I601_2488 (alkA)
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_2488 (alkA)
Enzymes [BR:
ndk01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.21 DNA-3-methyladenine glycosylase II
I601_2488 (alkA)
Transcription factors [BR:
ndk03000
]
Prokaryotic type
Helix-turn-helix
AraC family
I601_2488 (alkA)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
I601_2488 (alkA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AlkA_N
Ada_Zn_binding
HTH_18
HTH_AraC
HhH-GPD
Motif
Other DBs
NCBI-ProteinID:
ANH38904
UniProt:
A0A1A9GKV5
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All DBs
Position
2591264..2592775
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AA seq
503 aa
AA seq
DB search
MTTRAEPRTRLDAESCYAAVKARDRRFDGLFWTAVRTTGIYCRPSCPARTPAAGNVTFHP
SAAAAQGAGYRACKRCLPDATPGSPGWDVAAGVAGRAMRLVGDGVVDREGVDGLARRLGY
SPRHLARVLTAELGAGPLALARARRAQTARVLIETTDLPLTEVAFAAGFASVRQFNQTVR
EVYAVTPTQLRGRRTAAPTTGEISLRLAVRTPFAGQALLSFLAYHLVPGVETAGAGFYAR
TLDLPHGPGTVRLELDPALDEVPGGGVALLTARFRLTDLRDTAAAVERVRRLVDADCDPL
PVAEHLGADPVLGPLARALPGLRLPGQVDGDETAVRTVVGQQVSVTGARTVGGRIVAAHG
RPVETGEPGLTHLFPDAATLAEVDPETLPMPRARGRALVGLSAALARGDIALDRGPQRDQ
VRAAMVALPGIGPWTADYVAMRALGHPDVFLPTDLGVRTALKRLGQEPAVAIARAPEWSP
WRSYALMHLWQTLMPAPPTTEDD
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgcgagcggagccccggacccggctggacgccgagtcctgctacgccgcggtc
aaggcccgcgaccggcgcttcgacggcctcttctggacggcggtgcggaccacgggcatc
tactgccgcccctcctgcccggcgcggaccccggccgccggcaacgtcaccttccacccc
agcgccgccgcggcccagggcgccggctaccgcgcctgcaagcggtgcctgccggacgcg
accccgggcagcccggggtgggacgtcgcggccggggtcgcgggacgcgcgatgcgcctg
gtcggcgacggggtcgtcgaccgtgagggcgtcgacggcctggctcggcggctcgggtac
agcccccgccacctcgcccgggtgctgaccgccgagctgggcgctggcccgctcgcgctg
gcccgggcccgtcgggcccagacggcgcgggtgctgatcgagaccaccgacctgccgctg
accgaggtcgccttcgccgccggcttcgcgagcgtgcgccagttcaaccagaccgtccgt
gaggtgtacgccgtgacacccacgcagctgcgcgggcgccggaccgcggccccgacgacc
ggcgagatctcgctgcggctcgcggtgcgcaccccgttcgccggccaggcgctcctgtcc
ttcctggcctaccacctggtgccgggcgtcgagaccgccggcgcagggttctacgcccgc
accctcgacctgccgcacggccccggcaccgtgcggctcgagctcgaccctgccctcgac
gaggtcccgggcgggggagtagccctgctgacggcacgcttccggctcaccgacctgcgc
gacaccgccgcggcggtggagcgggtccgtcgcctcgtcgacgccgactgcgacccgctg
ccggtcgccgagcacctcggcgccgatcccgtcctgggccctctcgcccgggcgctgccg
ggcctgcgcctgcccggccaggtcgacggtgacgagaccgcggtgcgcaccgtcgtcggc
cagcaggtctcggtcaccggggcccggaccgtcggcggccggatcgtcgccgcccacggt
cgtcccgtcgagaccggggagcccggtctgacccacctcttccccgacgccgcgaccctg
gcggaggtcgatcccgagaccctgccgatgccgcgggcgcgcggccgcgcactcgtcggg
ctgagcgcagccctggcccgcggggacatcgcgctggaccgggggccccagcgtgaccag
gtgcgggccgcgatggtcgcgctgcccgggatcggtccctggaccgccgactacgtggcg
atgcgggccctgggccaccccgacgtgttcctgcccaccgacctcggcgtgcgcacggcc
ctgaagcgtctgggccaggagcccgccgtcgcgatcgcccgcgccccggagtggagcccg
tggcgctcctacgccctgatgcacctgtggcagaccctgatgcccgccccaccgacgacg
gaggacgactga
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