Nocardioides dokdonensis: I601_2745
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Entry
I601_2745 CDS
T04431
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03030
DNA replication
ndk03430
Mismatch repair
ndk03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
I601_2745 (dnaE)
03430 Mismatch repair
I601_2745 (dnaE)
03440 Homologous recombination
I601_2745 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndk03032
]
I601_2745 (dnaE)
03400 DNA repair and recombination proteins [BR:
ndk03400
]
I601_2745 (dnaE)
Enzymes [BR:
ndk01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
I601_2745 (dnaE)
DNA replication proteins [BR:
ndk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
I601_2745 (dnaE)
DNA repair and recombination proteins [BR:
ndk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
I601_2745 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
Motif
Other DBs
NCBI-ProteinID:
ANH39161
UniProt:
A0A1A9GNW8
LinkDB
All DBs
Position
2861261..2864821
Genome browser
AA seq
1186 aa
AA seq
DB search
MANSSSDSFVHLHVHTEYSMLDGAARLGALTERAAELGMPAVAMTDHGNVFGAYEFYSKA
KAAGVKPIIGIEAYFAPNISRFERKGVNFYDGGPDDVSNRGAYTHMTLLSESTEGMHNLF
RLSSGAWREGFFKHPRMDRELLSQHGKGIIGTTGCPSGEIQVHLRYGNYAAARQTAADFQ
DILGKENYFLELMDHGLDIENRVRGGLLELGRDLKIPLLATNDSHYVMREDAKSQEHLLC
INSGSTMDIPAGDGPGQRFAFSGDGYYLKSAEEMRALWADKYQLREACDNTLLIAERCEV
EFSEGVGKYMPQFPCPPGENEDSWLIKEVERGLQVRYPQGIPDAVRKQADFEIGVITQMG
FPGYFLVVADFINWAKNNGIRVGPGRGSGAGSMVAYALRITDLDPLVHGLIFERFLNPDR
VSMPDFDIDFDERRRGEVIRYVTDKYGDDRVSYIVTYGTIKAKQAVKDSSRILGYPFAMG
DRITKAMPAAVMGKDVPLQQIFDPAHARYGEGGEFRQLYDGDNDVQKVVDTAIGIEGLKR
QWGVHAAGVIMSSEPLVDVIPLLKRPADGAMITQFDYPTCENLGLIKMDFLGLRNLTVLD
DAIKNIEANRGETVVLEDLELTDEATYALLQRGDTLGVFQLDGGPMRSLLRSMRPDTFED
ISAVGALYRPGPMGADSHNKYARRKTGREPVEPIHPELAEALEDVLGETYGLIVYQEQVM
AIAQKLAGYTLGQADLLRRAMGKKKKSELDKQFEAFSAGMTERGYSHAAIKTLWDILLPF
SDYAFNKAHSAAYGLVSYWTAYLKANFPAEYMAALLTSVRDDKDKSAIYLNECRRMKIQV
LPPDVNQSSANFTPVGQDVRFGLTAVRNVGVNVVDGIVAAREEKGHYTDFNDFMDKVPAL
VCNKRVIESLIKAGAFDEMKHLRRSLVAIHETAVDQYVDIKRNEAIGQDSLFGGMDDDGG
GSFGISVTVPDIDEWDKTTLLAHERDMLGLYVSDHPLLGLEHVLANGSDCTIGQLMLDEE
RTDGSPITISGLVTSVQRKITKRGDAWAMITLEDLDGGIDVLLFPSSYQLASTLLVEDAI
LTVKGRLSRSKDQPEIHGQEVSVPDISDGPSGPVVISMPSTRCTGPVVDQLKDVLGTHPG
MTEVRLRLMTREATKVMRLDDRLRVTPTPALFADLKALLGPGCLTS
NT seq
3561 nt
NT seq
+upstream
nt +downstream
nt
atggcgaactcctcgtcggactccttcgtgcacctgcacgtgcacaccgagtactccatg
ctcgacggggccgcccgtctcggcgccctgaccgaacgcgccgccgagctcgggatgcct
gcggtggcaatgaccgaccacggcaacgtgttcggcgcctacgagttctactccaaggcc
aaggccgcgggggtgaagccgatcatcggcatcgaggcctacttcgcgcccaacatctcc
cgcttcgagcgcaagggcgtcaacttctacgacggcggccccgacgacgtctccaaccgc
ggcgcctacacccacatgaccctgctctcggagtccaccgagggcatgcacaacctcttc
cggctctcgagcggcgcctggcgcgagggcttcttcaagcatcctcggatggaccgcgag
ctgctctcgcagcacggcaaggggatcatcgggaccaccggctgcccgtccggggagatc
caggtccacctgcgctacggcaactacgccgcggcccgccagaccgccgcggacttccag
gacatcctgggcaaggagaactacttcctcgagctgatggaccacgggctcgacatcgag
aaccgggtgcgcggcgggctcctcgagctcggccgcgacctgaagatcccgctcctggcc
accaacgactcgcactacgtgatgcgcgaagacgccaagagccaggagcacctgctgtgc
atcaactccggctccacgatggacatcccggccggcgacggacccggtcagcgcttcgcg
ttctccggtgacggctactacctgaagtccgcggaggagatgcgggcgctgtgggcggac
aagtaccagctgcgcgaggcctgcgacaacacgctgctcatcgccgagcgctgcgaggtg
gagttctccgagggcgtcggcaagtacatgccgcagttcccgtgccctccgggggagaac
gaggactcctggttgatcaaggaggtcgagcgcggcctgcaggtgcgctacccccagggg
atccccgacgcggtgcgcaagcaggccgacttcgagatcggcgtcatcacccagatgggc
ttccccggctacttcctggtggtcgccgacttcatcaactgggccaagaacaacgggatc
cgggtgggccccggccgtggttcgggtgcgggctcgatggtcgcctacgcgctgcgcatc
accgacctcgacccgctcgtgcacggactgatcttcgagcgcttcctcaaccccgaccgc
gtctcgatgcccgacttcgacatcgacttcgacgagcgccggcgcggcgaggtgatccgc
tacgtcaccgacaagtacggcgacgaccgggtctcctacatcgtcacctacggcaccatc
aaggccaagcaggccgtcaaggactcctcgcgcatcctgggctaccccttcgcgatgggg
gaccggatcaccaaggcgatgcctgccgcggtgatgggcaaggacgtgccgctgcagcag
atcttcgaccccgcgcacgcccggtacggcgagggcggcgagttccgccagctctacgac
ggtgacaacgacgtccagaaggtcgtcgacaccgccatcggcatcgagggcctcaagcgc
cagtggggcgtgcacgccgccggcgtgatcatgtccagcgagccgctggtcgacgtgatc
ccgctgctgaagcgtcccgccgacggcgcgatgatcacccagttcgactacccgacgtgc
gagaacctcggactgatcaagatggacttcctggggttgcgcaacctcacggtcctcgac
gacgcgatcaagaacatcgaggccaaccgcggcgagacggtggtcctggaggacctcgag
ctcaccgacgaggccacctacgcgctgctccagcgcggcgacaccctgggcgtcttccag
ctcgacgggggtccgatgcgctccctgctgcgctcgatgcgtcccgacacgttcgaggac
atctccgcggtcggcgcgctctaccggcccggcccgatgggtgcggactcgcacaacaag
tacgcccgccgcaagaccggccgcgaaccggtggagccgatccaccccgagctcgccgag
gccctcgaggacgtgctgggcgagacgtacggcctgatcgtctaccaggagcaggtgatg
gcgatcgcgcagaagctcgccggctacaccctgggccaggccgacctgctgcgccgcgcg
atgggcaagaagaagaagtcggagctggacaagcagttcgaggcgttctcggcgggcatg
accgagcggggctactcgcacgccgccatcaagacgctgtgggacatcttgctcccgttc
tccgactacgccttcaacaaggcgcactccgcggcgtacggactggtgtcctactggacc
gcctacctcaaggcgaacttccccgccgagtacatggccgcgctgctcacctcggtgcgc
gacgacaaggacaagtcggcgatctacctcaacgagtgccgacggatgaagatccaggtg
ctgccccccgacgtcaaccagtcgtccgcgaacttcacccccgtcgggcaggacgtccgc
ttcgggctcaccgcggtgcgcaacgtcggcgtcaacgtcgtcgacggcatcgtcgccgcg
cgcgaggagaaggggcactacaccgacttcaacgacttcatggacaaggtgccggcgctg
gtgtgcaacaagcgcgtcatcgagtccctgatcaaggcgggcgccttcgacgagatgaag
cacctgcgccgctcgctcgtggcgatccacgagaccgcggtcgaccagtacgtcgacatc
aagcgcaacgaggccatcggccaggactcgctcttcggcggcatggacgacgacggcggc
gggtccttcgggatctcggtgaccgtgccggacatcgacgagtgggacaagacgaccctg
ctcgcccacgagcgcgacatgctcggtctctacgtctccgaccacccgctcctgggtctc
gagcacgtgctggccaacggcagcgactgcaccatcgggcagctgatgctcgacgaggag
cgcaccgacggctcgccgatcacgatcagcggcctggtcacctccgtgcagcgcaagatc
accaagcgcggcgacgcgtgggcgatgatcacgctcgaggacctcgacggcggcatcgac
gtgctgctgttcccgagctcctaccagctcgcctcgacgctcctggtcgaggacgccatc
ctgaccgtcaagggccggctctcgcgcagcaaggaccagccggagatccatggccaggag
gtctcggtccccgacatctccgacgggccctcgggtccggtggtcatctccatgccctcc
acccggtgcaccggcccggtggtcgaccagctcaaggacgtgctcggcacccaccctggg
atgaccgaagtacggttgcggctgatgacacgtgaggcgacgaaggtgatgaggctcgac
gaccggctgcgggtgaccccgacgccggcgctgttcgccgacctcaaggcgttgctgggg
ccgggatgcctgaccagctga
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