Nocardioides dokdonensis: I601_2895
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Entry
I601_2895 CDS
T04431
Name
(GenBank) Putative ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I601_2895
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndk03019
]
I601_2895
Messenger RNA biogenesis [BR:
ndk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
I601_2895
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
ANH39311
UniProt:
A0A1A9GPA8
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Position
3032554..3034239
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AA seq
561 aa
AA seq
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MSHPHPELSAPPALADHGLRVTAFGGLGEIGRNMTAFEHQGRLLIVDCGVLFPEDHQPGV
DLVLPDWSSISDRLDTVEALVLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLR
EHRLRETVHHVVKEGDRMSFGPFELEFVAVNHSIPDALAVAIRTSAGTVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPTEKAITPVIDQVFRESKQRIIVA
CFASHIHRVQQVLDAAYAHERQVAWVGRSMVRNMGIARDLGYLRVPPNTVVEAKQLADLP
AERQVLISTGSQGEPMSALSRIAQRNHHFVHIEEGDTVLLASSLIPGNENAVYRVINGLS
RWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPVHGEIRHMLANAELARMTGVE
NVVVAQDGMVVDLVDGVAEIVGKVDCGYVYVDGSSVGDVTESDLKDRRILGEEGFVSVIV
VLDSVTGKVASGPEIHARGNAIDAASLQEVKPAIIEALDRAVAEGNTDTYALQQTVRRVV
GRWVSSTHRRRPMIIPVVLES
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtctcatccccaccccgagctctccgctccgccggccctggccgaccacggactgagg
gtcacggcgttcggtggtctcggcgagatcggtcgcaacatgaccgccttcgagcaccag
ggacgcctgctcatcgtcgactgcggcgtgctgttccccgaggaccaccagcccggcgtc
gacctcgtcctcccggactggtcctcgatcagcgaccggctcgacaccgtcgaggcgctg
gtgctgacccacggtcacgaggaccacatcggggccacgccctacctgttgcgcgagcgc
ggcgacatcccgctcgtgggctccgagctgacgttggccctgctcggctcgaagctgcgc
gagcaccggctgcgcgagacggtgcaccacgtggtcaaggagggcgaccggatgagcttc
gggcccttcgagctcgagttcgtcgcggtcaaccactcgatccccgacgccctggcggtc
gcgatccgcaccagcgccggcaccgtgctgcacaccggcgacttcaagatggaccagctg
cccctcgacggacggatcacggacctgcgggccttcgcccggctgggggaggagggggtc
gacctcttcctgacagactccaccaacgccgagacgcccgggttcaccccgaccgagaag
gcgatcaccccggtcatcgaccaggtcttccgggagtcgaagcagcgcatcatcgtcgcc
tgcttcgcctcccacatccaccgcgtccagcaggtcctcgacgcggcgtacgcccacgag
cgccaggtggcctgggtggggcgctccatggtgcgcaacatgggcatcgcccgcgacctg
ggctacctccgggtgccgccgaacacggtggtcgaggccaagcagctcgccgacctgccc
gccgagcgccaggtcctcatctcgaccggctcgcagggcgagccgatgagtgcgctgagc
cggatcgcccagcgcaaccaccacttcgtgcacatcgaggagggcgataccgtcctgctc
gcctcgagcctgatccccggcaacgagaacgccgtctaccgcgtcatcaacggcctgtcg
cgctggggcgcccgggtggtgcacaagggcaacgcgatggtccacgtcagcgggcacgcc
agcgccggcgagctcctgtactgctacaacatcgtgaagccgcgcaacgtgctgccggtg
cacggcgagatccggcacatgctcgccaacgccgagctggcccggatgaccggcgtcgag
aacgtcgtcgtcgcccaggacggcatggtcgtcgacctcgtcgacggggtggccgagatc
gtgggcaaggtcgactgcggctacgtctacgtcgacggctcctcggtcggcgacgtcacc
gagtccgacctcaaggaccgccggatcctcggcgaggaggggttcgtctcggtgatcgtg
gtgctggactccgtgaccggcaaggtcgccagcgggcccgagatccacgcccgcggcaac
gccatcgacgccgcaagcctccaggaggtcaagccggccatcatcgaggccctcgaccgg
gccgtggccgaggggaacaccgacacctacgccctgcagcagacggtgcgccgggtcgtg
ggccgctgggtctccagcacccaccgccgccgcccgatgatcatcccggtcgtcctcgag
tcctga
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