KEGG   Nocardioides dokdonensis: I601_2895
Entry
I601_2895         CDS       T04431                                 
Name
(GenBank) Putative ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
ndk  Nocardioides dokdonensis
Pathway
ndk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ndk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I601_2895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ndk03019]
    I601_2895
Messenger RNA biogenesis [BR:ndk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     I601_2895
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2
Other DBs
NCBI-ProteinID: ANH39311
UniProt: A0A1A9GPA8
LinkDB
Position
3032554..3034239
AA seq 561 aa
MSHPHPELSAPPALADHGLRVTAFGGLGEIGRNMTAFEHQGRLLIVDCGVLFPEDHQPGV
DLVLPDWSSISDRLDTVEALVLTHGHEDHIGATPYLLRERGDIPLVGSELTLALLGSKLR
EHRLRETVHHVVKEGDRMSFGPFELEFVAVNHSIPDALAVAIRTSAGTVLHTGDFKMDQL
PLDGRITDLRAFARLGEEGVDLFLTDSTNAETPGFTPTEKAITPVIDQVFRESKQRIIVA
CFASHIHRVQQVLDAAYAHERQVAWVGRSMVRNMGIARDLGYLRVPPNTVVEAKQLADLP
AERQVLISTGSQGEPMSALSRIAQRNHHFVHIEEGDTVLLASSLIPGNENAVYRVINGLS
RWGARVVHKGNAMVHVSGHASAGELLYCYNIVKPRNVLPVHGEIRHMLANAELARMTGVE
NVVVAQDGMVVDLVDGVAEIVGKVDCGYVYVDGSSVGDVTESDLKDRRILGEEGFVSVIV
VLDSVTGKVASGPEIHARGNAIDAASLQEVKPAIIEALDRAVAEGNTDTYALQQTVRRVV
GRWVSSTHRRRPMIIPVVLES
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgtctcatccccaccccgagctctccgctccgccggccctggccgaccacggactgagg
gtcacggcgttcggtggtctcggcgagatcggtcgcaacatgaccgccttcgagcaccag
ggacgcctgctcatcgtcgactgcggcgtgctgttccccgaggaccaccagcccggcgtc
gacctcgtcctcccggactggtcctcgatcagcgaccggctcgacaccgtcgaggcgctg
gtgctgacccacggtcacgaggaccacatcggggccacgccctacctgttgcgcgagcgc
ggcgacatcccgctcgtgggctccgagctgacgttggccctgctcggctcgaagctgcgc
gagcaccggctgcgcgagacggtgcaccacgtggtcaaggagggcgaccggatgagcttc
gggcccttcgagctcgagttcgtcgcggtcaaccactcgatccccgacgccctggcggtc
gcgatccgcaccagcgccggcaccgtgctgcacaccggcgacttcaagatggaccagctg
cccctcgacggacggatcacggacctgcgggccttcgcccggctgggggaggagggggtc
gacctcttcctgacagactccaccaacgccgagacgcccgggttcaccccgaccgagaag
gcgatcaccccggtcatcgaccaggtcttccgggagtcgaagcagcgcatcatcgtcgcc
tgcttcgcctcccacatccaccgcgtccagcaggtcctcgacgcggcgtacgcccacgag
cgccaggtggcctgggtggggcgctccatggtgcgcaacatgggcatcgcccgcgacctg
ggctacctccgggtgccgccgaacacggtggtcgaggccaagcagctcgccgacctgccc
gccgagcgccaggtcctcatctcgaccggctcgcagggcgagccgatgagtgcgctgagc
cggatcgcccagcgcaaccaccacttcgtgcacatcgaggagggcgataccgtcctgctc
gcctcgagcctgatccccggcaacgagaacgccgtctaccgcgtcatcaacggcctgtcg
cgctggggcgcccgggtggtgcacaagggcaacgcgatggtccacgtcagcgggcacgcc
agcgccggcgagctcctgtactgctacaacatcgtgaagccgcgcaacgtgctgccggtg
cacggcgagatccggcacatgctcgccaacgccgagctggcccggatgaccggcgtcgag
aacgtcgtcgtcgcccaggacggcatggtcgtcgacctcgtcgacggggtggccgagatc
gtgggcaaggtcgactgcggctacgtctacgtcgacggctcctcggtcggcgacgtcacc
gagtccgacctcaaggaccgccggatcctcggcgaggaggggttcgtctcggtgatcgtg
gtgctggactccgtgaccggcaaggtcgccagcgggcccgagatccacgcccgcggcaac
gccatcgacgccgcaagcctccaggaggtcaagccggccatcatcgaggccctcgaccgg
gccgtggccgaggggaacaccgacacctacgccctgcagcagacggtgcgccgggtcgtg
ggccgctgggtctccagcacccaccgccgccgcccgatgatcatcccggtcgtcctcgag
tcctga

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