KEGG   Nocardioides dokdonensis: I601_2907
Entry
I601_2907         CDS       T04431                                 
Name
(GenBank) putative ATP-dependent helicase Lhr
  KO
K03724  ATP-dependent helicase Lhr and Lhr-like helicase [EC:5.6.2.6 5.6.2.4]
Organism
ndk  Nocardioides dokdonensis
Brite
KEGG Orthology (KO) [BR:ndk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ndk03400]
    I601_2907
Enzymes [BR:ndk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     I601_2907
    5.6.2.6  RNA 3'-5' helicase
     I601_2907
DNA repair and recombination proteins [BR:ndk03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    I601_2907
SSDB
Motif
Pfam: DEAD_assoc WH_Lhr WH4_Lhr WH3_Lhr DEAD WH2_Lhr Helicase_C ResIII AAA_25 DUF6406 Cas3-like_C_2 DprA_WH
Other DBs
NCBI-ProteinID: ANH39323
UniProt: A0A1A9GNZ4
LinkDB
Position
complement(3050917..3055581)
AA seq 1554 aa
MPDVAAAHPALDRFSEPTRTWFQAAFAEPTPAQAGAWEAIGAGRHALVVAPTGSGKTLSA
FLWSIDRLLTDAPPEDKQQRCRVLYISPLKALAVDVERNLRAPLTGIRHTAARLGAELPE
VRVGVRSGDTSAADRRKMVTTPPDVMITTPESLFLMLTSQAREALRGVQTVILDEVHAVA
GTKRGAHLGISLERLDALLERPAQRIGLSATVRPVEEVARYLGGTAPVEVVAPPSEKRWD
LSVVVPVEDMTSPGGTDASDADDEGAGERVSSIWPHVEERVVDLIEQHRSTIVFANSRRL
SERLTARLNEIAAQRAGVEAEPGDRIPAQAMGQSGATEGSAPVIAKSHHGSVSKEQRALI
EDDLKRGRLPAVVATSSLELGIDMGAVDLVVQIESPPSVASALQRVGRAGHQVGEVSRGV
LFPKHRGDLAQTAVSVERMRAGAIESLRVPTNPLDVLAQHVVAMTALEAWGVEELYDLVR
RSASFAGLPRSAYDGVLDLLAGRYPSDEFAELRPRIVWDRVTGELTGRPGAQRLAVTSGG
TIPDRGLFGVFLVGGEGPGRRVGELDEEMVYESRVGDIFALGATSWRIEDITHDRVLVTP
APGIPGRLPFWKGDGLGRPAELGAAVGAFTRELGALPRAKAEARARENGLDEFAAGNLVT
YLHEQLEATNLLPSDTTLLVERFRDELGDWRLVLHSPYGTPVHAPWALAINARLRERYGV
DGQAVASDDGIVIRVPDTDAEPPGADLVVFEPDEVDDLVTQEVGGSSLFASRFRECAARA
LLLPRRDPGRRSPLWQQRQRSAALLEVASRYPSFPIILEAVRECLQDVYDLPSLVGLMRR
VERREVQVAEVTTHAPSPFARSLLFGYVAQFVYEGDSPIAERRAAALSLDQGLLAELLGR
AELRELLDPEVLEEVEAELQRLSEDRRARNAEGLADLVRLLGPLSREEVVARSVPGADVD
AWAQELTASRRIVEVRMAGAERWSAIEDIGRLRDGLGVPVPPGTPDAFTDLVEDPIGDLV
ARHARTHGPFTVDDVAARLGLGTAVVRQTLQRLGSQGRVLDGEFRPAGSGTEWCDAEVLR
KLRRRSLARLRKEVEPVEPDALGRFLGAWQHVWAAAPSAGGRAGSGRGGLRGVDGVLSAI
DQLAGCPVPASALEPLVLAARVRDYEASYLDELTASGEVIWAGHGTLPGSDGWVSLHLAD
SADLTLPEPQAPEHSEAGQAVLDALAGGGAYFFRQLADTVHAAGVEASDPVLSAALWELV
WAGRVSNDTLTPLRALTRGGNASHRTRRPPPRARMGRPRMGSTTGSGARPTTARTGPPET
AGRWALLPAIDADPTRRAHAVAERLLDRHGVVTRGAVVSERVPGGFAAVYKVLSAFEDTG
RCRRGYFVSGLGAAQFGTSGAVDRLRTFAEGVARPDNAGGRDEAPVALALAATDPANPYG
AALAWPTREEGEAGHRPGRKAGAMVVLVDGRLVLYIERGGRTLLTWSEEADLLGPAVAAL
AAAAGRGALGRLTVEKADGEQLLGKGGTPLREALTQAGFVSTPRGLRLRTPDRA
NT seq 4665 nt   +upstreamnt  +downstreamnt
gtgcccgacgtcgctgccgcccaccccgcactggaccgcttcagcgaaccgacgcggacc
tggttccaggcggcgttcgccgagccgaccccggcccaggcaggcgcctgggaggccatc
ggcgccgggcggcacgcgctggtcgtggccccgaccgggtcgggcaagacgctgagcgcc
ttcctgtggtcgatcgaccggctgctcaccgacgcccccccggaggacaagcagcagcgc
tgccgggtcctctacatctccccgctcaaggcgctcgcggtcgacgtcgagcgcaacctc
agggccccgctgaccggcatccgccacaccgccgcccgcctcggcgccgagctgcccgag
gtccgggtgggggtccggtcgggcgacaccagcgccgccgaccggcgcaagatggtcacc
acaccgccggacgtcatgatcaccacgccggagtcactgttcctgatgctcacctcgcag
gcgcgcgaggcgctgcgcggggtgcagaccgtgatcctcgacgaggtgcacgccgtggcc
ggcaccaagcgcggagcccacctcggcatctccctggagcggctcgacgccctcctcgag
cggccggcgcagcgcatcgggctctccgcgaccgtgcgtcccgtcgaggaggtggcgcgc
tacctgggtggcaccgccccggtcgaggtggtcgccccgcccagcgagaagcgctgggac
ctctcggtggtggtgcccgtcgaggacatgaccagccctggcgggacagacgcctccgac
gcggacgacgagggcgcgggagagcgggtctcgagcatctggccgcacgtcgaggagcgg
gtggtcgacctgatcgagcagcaccgctcgacgatcgtcttcgccaactcccgccgcctc
tccgagcggctgaccgcccggctcaacgagatcgccgcccagcgggccggggtcgaggcc
gagcccggcgaccggatcccggcccaggccatgggccagtccggggccaccgagggcagt
gcccccgtcatcgcgaagtcccaccacggctcggtctccaaggagcagcgggcgctcatc
gaggacgacctcaagcgcggccgcctgcccgcggtggtcgccaccagcagcctcgagctc
ggcatcgacatgggcgcggtcgacctcgtcgtgcagatcgagtccccgcccagcgtcgcc
agcgcgctgcagcgggtgggccgcgccggccaccaggtcggcgaggtctcgcgcggcgtg
ctgttccccaagcaccgcggcgacctcgcccagaccgcggtgtcggtcgagcggatgcgc
gcgggtgcgatcgagtcgctgcgggtcccgaccaaccccctcgacgtgctggcccagcac
gtcgtggcgatgacggcgctggaggcgtggggggtcgaggagctctacgacctggtgcga
cgctcggcctcgttcgcgggcctgccccgctcggcgtacgacggggtgctcgacctgctg
gccgggcgctaccccagcgacgagttcgccgagctgcgcccgcgcatcgtgtgggaccgg
gtcaccggcgagctgacgggccggcccggcgcccagcggctcgcggtgacgagcggtggc
accatccccgaccgcggcctcttcggcgtcttcctcgtcgggggcgagggccccggtcgc
cgggtcggtgagctcgacgaggagatggtctacgagtcccgcgtcggcgacatcttcgcg
ctcggcgccaccagctggcggatcgaggacatcacccacgaccgggtcctggtcaccccg
gcgccgggcatcccgggccggctgccgttctggaagggcgacggcctgggccggcccgcc
gagctcggcgccgcggtcggcgccttcacccgagagctcggcgcgctgccgagggcgaag
gcggaggcacgcgcccgcgagaacggtctcgacgagttcgcggccggcaacctggtcacc
tacctgcacgagcagctcgaggccacgaacctgctgcccagcgacaccacgctcctcgtc
gagcgcttccgcgacgagctcggcgactggcgcctggtgctgcactcgccctacggcacc
cctgtgcacgcgccgtgggcgctggccatcaacgcccgcctgcgggagcggtacggcgtc
gacggccaggccgtggcctccgacgacggcatcgtgatccgggttcccgacaccgacgcc
gagccgccgggtgccgacctcgtggtcttcgagcccgacgaggtcgacgacctggtcacc
caggaggtgggtgggtcgtcgctgttcgcctcccgcttccgcgagtgcgcggcgcgggcc
ctgctgctgccgcgccgtgacccggggcggcgctcaccgttgtggcagcagcgccagcgc
tccgcagcgctgctcgaggtcgcctcgcgctacccctcgttcccgatcatcctcgaggcg
gtgcgcgagtgcctgcaggacgtctacgacctgccgagcctggtggggctgatgcgccgc
gtggagcgccgcgaggtgcaggtcgccgaggtcaccacccacgccccctcccccttcgcc
cgcagcctgctcttcggctacgtcgcccagttcgtctacgagggcgactcccccatcgcc
gagcgccgggcggccgcgctctccctcgaccagggcctgctcgccgagctgctcgggcgc
gccgagctgcgcgagctgctcgaccccgaggtgctcgaggaggtcgaggccgagctgcaa
cgactcagcgaggaccgccgggcccgcaacgccgaggggctcgccgacctggtgcgcctg
ctcgggccgctctcccgggaggaggtggtggcccgctcggtgcccggcgccgacgtcgac
gcctgggcccaggagctcaccgccagtcgccgcatcgtcgaggtccggatggccggtgcc
gagcggtggagcgccatcgaggacatcgggcgcctgcgtgacggtctcggggtgccggtc
ccgccgggcacgcccgacgcgttcaccgacctcgtcgaggacccgatcggcgacctggtg
gcgcgccacgcccgcacccacggccctttcaccgtcgacgacgtcgccgcccgcctgggg
ctgggcaccgccgtcgtccgccagaccctgcagcgtctcggctcccagggccgcgtgctc
gacggggagttccgtcccgcgggctcgggcaccgagtggtgcgacgccgaggtgctgcgc
aagctgcgtcgccgctcgctggcccggctgcgcaaggaggtcgagccggtcgagccggac
gccctgggccgcttcctgggcgcgtggcagcacgtgtgggccgcggcgccgtccgcgggc
ggtcgcgccggcagcggtcggggcggcctgcgcggcgtcgacggcgtgctgtcggcgatc
gaccagctcgctggctgcccggtgcccgcgtcggcgctcgagccgctggtcctggccgcc
cgggtgcgcgactacgaggcgtcgtacctcgacgagctcaccgcctccggcgaggtcatc
tgggcggggcacggcacgttgcccggctccgacggctgggtctcgctgcacctggccgac
tccgccgacctgaccctgcccgagccgcaggcgcccgagcactccgaggccgggcaggcg
gtgctcgacgccctggccggtggcggcgcctacttcttccgccagctcgccgacaccgtg
cacgccgccggcgtcgaggcgagcgaccccgtgctctccgcggcgctgtgggagctcgtg
tgggcaggtcgggtcagcaacgacaccctgacgccgctgcgcgccctgacccgtggtggc
aacgcgagccaccgcacccgacgcccgccgccgcgggctcggatggggcgcccgaggatg
gggtcgacgaccggttccggcgcccgcccgaccaccgcacgcaccggcccgcccgagacc
gccgggcgctgggcgctgctgcccgcgatcgacgccgacccgacccgccgggcgcacgcc
gtggccgagcggctgctcgaccggcacggcgtcgtcacgcgcggggccgtcgtgagcgag
cgcgtccccggcggtttcgccgcggtctacaaggtgctctccgccttcgaggacaccggc
cgctgccggcgtgggtacttcgtgtccgggctcggcgccgcccagttcggcacctcgggc
gcggtcgaccggctgcgcaccttcgccgagggcgtcgcccgtcccgacaacgccggcggc
cgcgacgaggccccggtcgccctcgccctggccgccaccgacccggccaacccctacggc
gcggcgctggcctggccgacccgcgaggagggcgaggccggccaccgacccgggcgcaag
gccggggcgatggtcgtgctcgtcgacgggcgcctggtgctctacatcgagcgcggcggc
cgcaccctgctgacctggagcgaggaggccgatctcctgggccccgccgtcgccgccctg
gccgcggcggccggccgcggcgccctggggcgcctcaccgtcgagaaggccgacggggag
cagctcctgggcaagggcgggaccccgctgcgcgaggcgctgacacaggccggcttcgtc
tccaccccgcgcgggctacgactgcggacccccgaccgtgcctga

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