KEGG   Nocardioides dokdonensis: I601_3112
Entry
I601_3112         CDS       T04431                                 
Symbol
helD_2
Name
(GenBank) Helicase IV
  KO
K03658  DNA helicase IV [EC:5.6.2.4]
Organism
ndk  Nocardioides dokdonensis
Brite
KEGG Orthology (KO) [BR:ndk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ndk03400]
    I601_3112 (helD_2)
Enzymes [BR:ndk01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     I601_3112 (helD_2)
DNA repair and recombination proteins [BR:ndk03400]
 Prokaryotic type
  Other factors with a suspected DNA repair function
   DNA helicases
    I601_3112 (helD_2)
SSDB
Motif
Pfam: UvrD-helicase UvrD_C AAA_19 Zn_ribbon_Top1 UvrD_C_2 AAA_30 Viral_helicase1 RUBY_RBDX AA_kinase Phage_endo_I ResIII AAA_12 AAA_16
Other DBs
NCBI-ProteinID: ANH39519
UniProt: A0A1A9GMK6
LinkDB
Position
3254160..3256751
AA seq 863 aa
MTPTGVVNIHVAEREKLRFERGSVWVRMSAPELGVIQPLTGLAKRAVTEFNHAVAREFAE
YESTLDLQPFVDALVRWWSAFQKATRDAWAKRRWLTEEFIVEWDTSLGHAVSGTALSMNQ
RRALAARVSGVEAEAVNAAFGDWNVRSHAADQNNALVNLELIDERSFFDRIEKTPLTDEQ
ARAVICFDNRVQLVAAAGSGKTSTMVAKAGWTIRKAHASGDEILLLAFNKAAAAELGERC
IARLANADIPATGLRATTFHAFGLRVIGEATGEKPRLAPGLDKNNGVGLLADVVRALRRR
SPEFAARWSLFQNVLGVPMSAEVDPEPDAWDPQRRRSGYRALNLDIMKSAGERAIANWLI
KSGVEFEYERPYEINLADAQHSQYRPDFFYPSTGVYHEHWALVPGQAEPPGYEGYLESSA
WKKRVHHANGTTLIETAARDLGSGSLFAQLEHQLRTTGIEPDFDPDRPVPGSPLLTDREM
LNLFRTFLAHAKSNRLEPAHLRSRVSKARNGTPDLRESLFLDLFDDVREEWDSRLREANE
VDFEDMLNQATDLVEAGRWMSPFRVVLVDEFQDASHARARLVKALVNRPAHFLFAVGDDW
QSIYRFAGSDISAMTEFEETFGAGHMMRLERTFRSSQELSTLAGDFVMKNPNQLTKTVRS
DRSHPAPVELAVVDTDAGVTDAIAQRLSELSAAVSEGSSLSVKILGRYRYEEELVPRTRY
RGLDVTFQTVHSSKGLEADHVIIPGLNRGGFPSTKEDDPLLRLALPEGDDFPHAEERRLF
YVALTRARDSVLLIARSGRESEFVTELISDGVISLLGDHEAGEAPERCPQCGRGLMVVRQ
GKYGPFLACNRFPACTSKRSITS
NT seq 2592 nt   +upstreamnt  +downstreamnt
atgacgccgactggcgtcgtgaacattcacgtcgctgagcgggagaagcttcgcttcgag
cgcggatctgtttgggtgcgcatgtcggctcctgagctcggggttatccaaccgctgaca
ggcctcgcgaaacgggctgtcacggagttcaaccacgcagtggcgcgtgagttcgccgag
tacgagtcgacgcttgacctccaaccctttgtcgacgcgttggttcgctggtggtccgcg
ttccaaaaggcgacccgggatgcttgggcgaagcggcggtggctcaccgaagagttcatc
gtcgagtgggacacgtcgctcggtcacgcggtctcgggcaccgccctatcgatgaaccag
cggcgggcgctcgccgcacgggtgagcggcgtcgaggcggaggccgtcaacgccgcattc
ggcgactggaacgtccggtcacacgcagccgaccagaacaacgctctcgtgaaccttgaa
ctgatcgacgaacgctcgttcttcgacaggatcgagaagacgccactcaccgacgagcag
gcccgagccgtcatctgcttcgacaacagggtgcagctcgtcgcggccgcgggttctggg
aagacatcgacgatggttgccaaggctggatggacgatccggaaggcccacgccagcggc
gacgagatattgctgcttgcgttcaacaaggcagctgcggcggagctcggcgaacgatgc
attgctcggcttgccaacgcggacatcccggcaaccggcctccgcgccactaccttccac
gcctttgggttacgtgtgattggtgaagcgactggcgaaaagccccgccttgcgccgggc
ctcgacaagaacaacggagttgggctcttggccgatgtcgtgcgagcgctgcggcgtagg
tcgccggagttcgcagcgcgctggtcgctgttccaaaacgtcctgggtgttcccatgagc
gccgaggtagatcctgagcccgacgcgtgggatccgcagaggcgtcgaagcggctaccgc
gcgctcaacctcgacatcatgaagagtgcgggcgagcgagcgatcgcgaactggctcatc
aagtccggcgtcgaatttgagtacgagcgtccatacgagatcaacctcgcggacgcgcag
cactcgcagtatcgacccgacttcttctatccatcaaccggcgtctaccacgagcactgg
gctctcgtgcccggccaggcggagcctcccggatacgaggggtacctcgagtccagtgcc
tggaagaagcgagttcatcacgccaacggcacgacgttgatcgagacggccgcaagggac
ctcggcagtggcagcctgttcgcgcagttggaacatcagctccgaaccaccggcatcgaa
ccggacttcgacccggatcggcccgtccccggaagcccactcctgacggaccgggagatg
ctcaatctattccggacgttcctggcgcacgcgaagagcaatcgacttgaaccagcgcac
ctccgatcgcgcgtgtccaaggcgcggaacggcactcctgaccttcgcgagtccctgttc
ctcgatctgtttgatgacgtgcgcgaggagtgggactcccggcttcgcgaggccaacgaa
gtcgacttcgaggacatgttgaatcaggcgaccgatctggtcgaagcagggaggtggatg
tcccccttccgagtcgtcctcgtcgacgagttccaggacgccagccacgcccgagcgcgg
cttgtgaaagcactggtcaatcgacctgcgcacttcctatttgctgtcggagacgactgg
cagtcgatctaccggttcgcgggctctgacatctcggcgatgacagagtttgaggaaacc
ttcggggctggccacatgatgcggctggagcggactttccgaagttcccaagagctcagc
acgctcgccggtgacttcgtcatgaagaacccgaaccagttgacgaagacggtccgttcg
gatcgctcccacccggcgccggtagaactcgccgtggtcgacaccgacgccggggtcacc
gacgcgatcgcccagaggctcagtgagctatctgcagcggtctccgaggggtcgagcctg
tcggtcaagatccttggccgctaccgctacgaggaagagcttgtcccgcgcacccgatat
cgcgggctcgacgtcacattccaaacagtccactcatcgaagggactcgaggcggaccac
gtgatcatcccgggactcaaccgcggtggatttccgagcaccaaggaagacgacccgctt
ctgcgccttgcgctcccggagggcgatgacttcccgcacgccgaagagcggcgactcttc
tacgtcgcgctcacccgagcgcgggactcggtgctactgattgcccgaagcggccgcgag
tcggagttcgtgaccgagctgatcagcgatggagtgatatccctacttggcgaccacgag
gcaggcgaggctcccgagaggtgcccgcaatgcggccgagggctgatggtcgtgcggcag
gggaagtacggaccgttcctggcatgcaaccgcttcccggcctgcacgtcgaagcggtca
atcaccagctga

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