KEGG   Nocardioides dokdonensis: I601_3940
Entry
I601_3940         CDS       T04431                                 
Name
(GenBank) hypothetical protein
  KO
K03628  transcription termination factor Rho
Organism
ndk  Nocardioides dokdonensis
Pathway
ndk03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ndk00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    I601_3940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ndk03021]
    I601_3940
   03019 Messenger RNA biogenesis [BR:ndk03019]
    I601_3940
Transcription machinery [BR:ndk03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     I601_3940
Messenger RNA biogenesis [BR:ndk03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     I601_3940
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N CoV_NSP2_C
Other DBs
NCBI-ProteinID: ANH40338
UniProt: A0A1A9GPY2
LinkDB
Position
complement(4156380..4158380)
AA seq 666 aa
MTQDSVPTAEAAAAPKKRAGGLNGMLIADLKSMAGALGIQGAGAMKKAQLVDAIKAAGSP
GSSAGAGASADAGAAAAVEKGATRTTTTTRQRTRVRVEPPVADETTSPPQEKSRREAPTD
QDAASDRSGRPERTDRSSATPEVSAAQQGKQDQSGKDQQRGREQQGRAHPDQNKQDQQQN
KQDQNKQDQNKQDQNKQDQQNRQNKQQNQNQNQNQNRQEQNKQDQNKQDQNKQDQNRQDQ
NRQDQQQDQGDDDGDGRGRSRRRRGRDRDRARPASNNRSEPDTTVLEDDVLVPAAGILDV
LDNYAFVRTSGYLPGPDDVYVSLSMVRKFGLRRGDAVVGEVRQPREGERKEKFNPMVRIE
SVNGSDPDAARTRVEFEKMTPLHPQERLRLERGPDDLIGRVIDLVAPIGKGQRGLIASPA
HAGKTAVLQAVAASLSANNPECHLMVVLVDERPEEVTDYERSVKGEVISSTFDRQPADHT
VVAELAIERAKRLVELGHDVVVLLDGITRLGRAYHLAGTGNGRVLSGGVDSTALHPPKQF
FGAARNIENGGSLTVLATATVESGSKVDEVIFEELSGTANMELRLSRDLARKRVFPAVDV
AQSGTRHEELLLGEGELPVVEKLRDSVADKETATAMRELRERLTGSQTNYEMLSTFQRSP
GRAARG
NT seq 2001 nt   +upstreamnt  +downstreamnt
gtgacgcaagactccgtccccaccgctgaggcggccgctgcgccgaagaagcgggccggg
ggtctgaacgggatgctcatcgccgacctcaagtccatggcgggtgccctgggcatccag
ggtgccggggcgatgaagaaggcccagctcgtcgatgccatcaaggccgccggctcgccc
ggtagcagtgcgggcgccggcgcgagcgccgacgccggcgcggccgcggccgtcgagaag
ggtgcgacgcggacgacgaccaccacgcgccagcgcacccgggtccgcgtcgagccgccg
gtcgccgacgagaccacatcacctcctcaggagaagtcccgccgcgaggcccccaccgac
caggacgctgcaagcgaccggtccgggcggcccgagcgcaccgacaggtcgtccgcgacg
cccgaggtgagtgccgcccagcagggcaagcaggaccagtcgggcaaggaccagcagcgt
ggccgcgagcagcagggacgcgcccacccggaccagaacaagcaggaccagcagcagaac
aagcaggaccagaacaagcaggaccagaacaagcaggaccagaacaagcaggaccagcag
aaccggcagaacaagcagcagaaccagaaccagaaccagaaccagaaccggcaagagcag
aacaagcaggaccagaacaagcaggaccagaacaagcaggaccagaaccggcaggaccag
aaccggcaggaccagcagcaggaccagggcgacgacgacggcgacggtcgcggacgcagc
cggcgtcggcgcggccgggaccgcgaccgcgcccggccggcgagcaacaaccgcagcgag
ccggacacgaccgtcctcgaggacgacgtcctggtgccggccgccggcatcctcgacgtg
ctcgacaactacgcgttcgtgcgcaccagcggctacctgcccggcccggacgacgtgtac
gtctccctgtcgatggtccgcaagttcggcctgcgccgcggtgacgcggtcgtcggcgag
gtgcgccagccccgcgagggcgagcgcaaggagaagttcaacccgatggtgcgcatcgag
agcgtcaacgggtccgacccggatgccgcccgcacccgggtcgagttcgagaagatgacg
cccctgcacccgcaggagcgcctgcgcctggagcggggacccgacgacctgatcggtcgg
gtcatcgacctggtggcgccgatcggcaagggccaacgcggcctgatcgcctcgcccgcg
cacgccggcaagaccgcggtgctgcaggccgtcgcggcctcgctgagcgccaacaacccg
gagtgccacctgatggtggtcctggtcgacgagcgcccggaggaggtcaccgactacgag
cgctcggtcaagggggaggtcatctcctccaccttcgaccgacagccggccgaccacacg
gtggtcgccgagctcgccatcgagcgggccaagcggctcgtggagctcggccacgacgtc
gtggtgctgctcgacggcatcacccggctcggtcgggcctaccacctggcgggcaccggc
aacggccgggtcctctccggcggggtcgactccaccgcgctgcacccgcccaagcagttc
ttcggcgccgcgcgcaacatcgagaacggcggctcgctgacggtcctggccaccgccacc
gtcgagagcggctcgaaggtcgacgaggtgatcttcgaggagctgagcgggaccgcgaac
atggagctgcggctgagccgcgacctcgcccgcaagcgggtcttcccggccgtcgacgtg
gcccagtcgggcacccggcacgaggagctcctcctcggcgagggtgagctgccggtcgtg
gagaagctgcgcgactcggtcgccgacaaggagaccgcaacggccatgcgcgagctgcgg
gagcggctcacggggtcgcagaccaactacgagatgctgagcacgttccagcgctcgccc
ggtcgcgcagcacgcggctga

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