Nocardioides dokdonensis: I601_3940
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Entry
I601_3940 CDS
T04431
Name
(GenBank) hypothetical protein
KO
K03628
transcription termination factor Rho
Organism
ndk
Nocardioides dokdonensis
Pathway
ndk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
I601_3940
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndk03021
]
I601_3940
03019 Messenger RNA biogenesis [BR:
ndk03019
]
I601_3940
Transcription machinery [BR:
ndk03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
I601_3940
Messenger RNA biogenesis [BR:
ndk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
I601_3940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
CoV_NSP2_C
Motif
Other DBs
NCBI-ProteinID:
ANH40338
UniProt:
A0A1A9GPY2
LinkDB
All DBs
Position
complement(4156380..4158380)
Genome browser
AA seq
666 aa
AA seq
DB search
MTQDSVPTAEAAAAPKKRAGGLNGMLIADLKSMAGALGIQGAGAMKKAQLVDAIKAAGSP
GSSAGAGASADAGAAAAVEKGATRTTTTTRQRTRVRVEPPVADETTSPPQEKSRREAPTD
QDAASDRSGRPERTDRSSATPEVSAAQQGKQDQSGKDQQRGREQQGRAHPDQNKQDQQQN
KQDQNKQDQNKQDQNKQDQQNRQNKQQNQNQNQNQNRQEQNKQDQNKQDQNKQDQNRQDQ
NRQDQQQDQGDDDGDGRGRSRRRRGRDRDRARPASNNRSEPDTTVLEDDVLVPAAGILDV
LDNYAFVRTSGYLPGPDDVYVSLSMVRKFGLRRGDAVVGEVRQPREGERKEKFNPMVRIE
SVNGSDPDAARTRVEFEKMTPLHPQERLRLERGPDDLIGRVIDLVAPIGKGQRGLIASPA
HAGKTAVLQAVAASLSANNPECHLMVVLVDERPEEVTDYERSVKGEVISSTFDRQPADHT
VVAELAIERAKRLVELGHDVVVLLDGITRLGRAYHLAGTGNGRVLSGGVDSTALHPPKQF
FGAARNIENGGSLTVLATATVESGSKVDEVIFEELSGTANMELRLSRDLARKRVFPAVDV
AQSGTRHEELLLGEGELPVVEKLRDSVADKETATAMRELRERLTGSQTNYEMLSTFQRSP
GRAARG
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
gtgacgcaagactccgtccccaccgctgaggcggccgctgcgccgaagaagcgggccggg
ggtctgaacgggatgctcatcgccgacctcaagtccatggcgggtgccctgggcatccag
ggtgccggggcgatgaagaaggcccagctcgtcgatgccatcaaggccgccggctcgccc
ggtagcagtgcgggcgccggcgcgagcgccgacgccggcgcggccgcggccgtcgagaag
ggtgcgacgcggacgacgaccaccacgcgccagcgcacccgggtccgcgtcgagccgccg
gtcgccgacgagaccacatcacctcctcaggagaagtcccgccgcgaggcccccaccgac
caggacgctgcaagcgaccggtccgggcggcccgagcgcaccgacaggtcgtccgcgacg
cccgaggtgagtgccgcccagcagggcaagcaggaccagtcgggcaaggaccagcagcgt
ggccgcgagcagcagggacgcgcccacccggaccagaacaagcaggaccagcagcagaac
aagcaggaccagaacaagcaggaccagaacaagcaggaccagaacaagcaggaccagcag
aaccggcagaacaagcagcagaaccagaaccagaaccagaaccagaaccggcaagagcag
aacaagcaggaccagaacaagcaggaccagaacaagcaggaccagaaccggcaggaccag
aaccggcaggaccagcagcaggaccagggcgacgacgacggcgacggtcgcggacgcagc
cggcgtcggcgcggccgggaccgcgaccgcgcccggccggcgagcaacaaccgcagcgag
ccggacacgaccgtcctcgaggacgacgtcctggtgccggccgccggcatcctcgacgtg
ctcgacaactacgcgttcgtgcgcaccagcggctacctgcccggcccggacgacgtgtac
gtctccctgtcgatggtccgcaagttcggcctgcgccgcggtgacgcggtcgtcggcgag
gtgcgccagccccgcgagggcgagcgcaaggagaagttcaacccgatggtgcgcatcgag
agcgtcaacgggtccgacccggatgccgcccgcacccgggtcgagttcgagaagatgacg
cccctgcacccgcaggagcgcctgcgcctggagcggggacccgacgacctgatcggtcgg
gtcatcgacctggtggcgccgatcggcaagggccaacgcggcctgatcgcctcgcccgcg
cacgccggcaagaccgcggtgctgcaggccgtcgcggcctcgctgagcgccaacaacccg
gagtgccacctgatggtggtcctggtcgacgagcgcccggaggaggtcaccgactacgag
cgctcggtcaagggggaggtcatctcctccaccttcgaccgacagccggccgaccacacg
gtggtcgccgagctcgccatcgagcgggccaagcggctcgtggagctcggccacgacgtc
gtggtgctgctcgacggcatcacccggctcggtcgggcctaccacctggcgggcaccggc
aacggccgggtcctctccggcggggtcgactccaccgcgctgcacccgcccaagcagttc
ttcggcgccgcgcgcaacatcgagaacggcggctcgctgacggtcctggccaccgccacc
gtcgagagcggctcgaaggtcgacgaggtgatcttcgaggagctgagcgggaccgcgaac
atggagctgcggctgagccgcgacctcgcccgcaagcgggtcttcccggccgtcgacgtg
gcccagtcgggcacccggcacgaggagctcctcctcggcgagggtgagctgccggtcgtg
gagaagctgcgcgactcggtcgccgacaaggagaccgcaacggccatgcgcgagctgcgg
gagcggctcacggggtcgcagaccaactacgagatgctgagcacgttccagcgctcgccc
ggtcgcgcagcacgcggctga
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