Neisseria dentiae: H3L92_00560
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Entry
H3L92_00560 CDS
T07671
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ndn
Neisseria dentiae
Pathway
ndn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
H3L92_00560
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndn03019
]
H3L92_00560
Enzymes [BR:
ndn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
H3L92_00560
Messenger RNA biogenesis [BR:
ndn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
H3L92_00560
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
AAA_19
AAA_22
Nexin_C
Motif
Other DBs
NCBI-ProteinID:
QMT45382
LinkDB
All DBs
Position
complement(118460..119851)
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AA seq
463 aa
AA seq
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MNPTFSSLGLGSEIVAALTEQGYETPTPIQAAAIPKALAGHDLLAAAQTGTGKTAAFMLP
SLERLKRYATPSTSPAMHPVRMLVLTPTRELADQIDQNVQGYIKNLPLRHTVLFGGVNMD
KQTADLRAGCEIVVATVGRLLDHVKQKNINFSKVEIVVLDEADRMLDMGFIDDIRSIMRM
LPKQRQTLLFSATFAPPIRKLAQDFMNNPEQVEVAAQNAASANVEQHVIAVDTARKRNLL
ERLIVDLNMNQVIVFCKTKQSVDQVTRDLQRREISAQAIHGDKSQQTRLETLGAFKEGAL
RVLVATDVAARGLDIAELPFVINYELPTQPEDYVHRIGRTGRAGADGVAISLMDEHEQKM
FEAIKELTRSQVEVERIEGFEPSWWQQDGTAATPAAPRTARERERNTREPKNRDNKYARS
ENRNERQADRNDPGAACGKIAGRSRRSRRERQKCALLQPNYGA
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgaatccgaccttttcatcactcggcttgggcagcgaaatcgtcgccgccctcaccgaa
caaggctacgaaacgcccaccccgattcaggccgccgccattcccaaagcattggccgga
cacgaccttctggccgccgcccaaaccggcaccggcaaaaccgccgcctttatgctgccc
agcctcgagcgcctgaaacgctacgccacccccagcacctcgcccgccatgcaccccgtg
cgcatgctggtgctcacgcccacgcgcgagctggccgaccaaatcgaccaaaacgtgcag
ggctacatcaaaaacctgccgctgcgccacaccgtgctcttcggcggcgtgaatatggac
aagcaaaccgccgacctgcgcgcaggctgcgaaatcgtcgtcgccaccgtcggccgcctg
ctcgaccacgtcaaacagaaaaacatcaatttcagcaaagtcgaaatcgtggtgctcgac
gaagccgaccgcatgctcgacatgggctttatcgacgacatccgcagcatcatgcgcatg
ctgcccaaacagcgccaaaccctgctgttttccgccacgttcgccccgcccatccgcaaa
ctggcgcaggatttcatgaacaaccccgagcaagtggaagtggccgcccaaaacgccgcc
agcgccaacgtcgagcaacacgttatcgccgtcgacaccgcccgcaaacgcaacctgctc
gagcgcctgattgtcgatttaaacatgaaccaggttatcgtgttctgcaaaaccaaacaa
agcgtcgaccaggtaacccgcgatttgcagcgccgcgaaatttccgcccaagccatccac
ggcgacaaatcgcagcaaacccgcctcgaaaccctgggtgcattcaaagaaggcgcattg
cgcgtgctggtggccaccgacgtggccgcccgcggcctcgacatcgccgagctgccgttt
gtgatcaactacgagctgcccacccagcccgaagactatgtgcaccgcatcggccgcacc
ggccgcgccggcgccgacggcgtggcgatttcactgatggacgaacacgaacagaaaatg
ttcgaagccatcaaagagctgacccgcagccaagtggaagtcgagcgcatcgaaggcttc
gagccgagctggtggcagcaagacggcaccgcagcaacccccgccgcgccgcgcaccgcc
cgcgaacgcgagcgcaacacccgcgagccgaaaaaccgcgacaacaaatacgcccgcagc
gaaaaccgcaacgaacgccaggccgaccgcaacgaccccggcgccgcctgcggcaaaatc
gccggccgctcccgccgcagccgccgcgaacggcagaaatgcgccctgctgcaacccaac
tacggcgcgtga
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