Neisseria dentiae: H3L92_05370
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Entry
H3L92_05370 CDS
T07671
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
ndn
Neisseria dentiae
Pathway
ndn03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ndn00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H3L92_05370 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndn03400
]
H3L92_05370 (mfd)
Enzymes [BR:
ndn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H3L92_05370 (mfd)
DNA repair and recombination proteins [BR:
ndn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H3L92_05370 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
CarD_TRCF_RID
MFD_D3
Helicase_C
ResIII
UB2H
ERCC3_RAD25_C
AAA_30
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QMT46200
LinkDB
All DBs
Position
1133361..1136831
Genome browser
AA seq
1156 aa
AA seq
DB search
MNHPVPAPSQKSRWLDLTRGSLPWALTQSLPEQPLKVILTQDVEQALRLQIAWQFFRPQD
NAVFLPDWETLPYERFSPHQDLVSERLAALWQVKSGLADVLIVPVATAMQKLAPVSFLLG
RTFWLKTGQTLDAESLRGNLVDAGYSHVSNVVASGEFAMRGGILDIFPMGSELPYRLDLF
GDEIDSIKTFDPDTQRTIAPVSEIRLLPAHEFPTDDDAQKIFRARFREEINADHHAAAVY
KAVSNGHFGAGVEYYLPLFFENELASVFDYIGDEALFVCIGDVHAEASRFWADVKSRFAM
AQGDETYPPLPPQHLYLSEDQFAGRLKAYGQILPDLNGKRHALPDVAVNRQSETPLAALQ
NFQTAFNGRILLTAESAGRRETMLGFFAQHGLKPKSVDGWQAFLSSDAPLAITVTPLAYG
FQTGTVGRAFMPDDTGHADHSTPSGINARPTSPIAVITESDLYQYVAKSRNVRRKKHAQV
SDGLLRDLAEINIGDPVVHEEHGIGRYLGLVTLDLGGEPAEMMLLEYAGEAQLYVPVSQL
HLISRYSGQAHENVQLHKLGSGAWTKAKRKAAEKARDTAAELLNLYAQRAAQEGFKFAFN
EADYQAFSDGFEYEETEDQAAAIAATIKDLTQGKPMDRLICGDVGFGKTEVALRAAFVAV
MGGKQVAVLAPTTLLVEQHAQNFADRFADFPVKVASLSRFNSGKATTETLKGMADGTVDI
VIGTHKLVQDDIQFKNLGLVIIDEEHRFGVRQKEQLKRLRANVDILTMTATPIPRTLSMA
LEGLRDFSLITTAPSRRLAVKTFVKPFSEGSVQEAVLRELKRGGQVFFLHNEVETIANMR
ERLETLLPEARIGVAHGQLRERELEQVMRDFLQQKFNVLLCSTIIETGIDIPNANTIIIN
RADKFGLAQLHQLRGRVGRSHHQAYAYLLTPEYITKDAEKRLDAIAAADELGAGFTLAMQ
DLEIRGAGEILGEGQSGEMMQVGFTLYTEMLKQAVRDLKKGRQPDLDAPLGVTTEIKLHS
PALLPESYCPDIHERLVLYKRLATCETEAQINAVHEELVDRFGLPEQPVKTLIESHRIRL
SAKAMGIDAIDATGEAVTLTFGKHHNLDPADIIMLMQSNKNWRMAGADKLRVGAVSDDVE
TRIHTVKAVLKKLAGE
NT seq
3471 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaccccgtccccgccccttcgcaaaaatcccgctggctggatttaacccgcggc
agcctgccgtgggcgttaacgcaaagcctgcctgaacaaccgctcaaagtgattctcacg
caagatgtcgagcaggcgttgcgcctgcagattgcgtggcagtttttccgcccgcaggat
aacgccgtgtttctgcccgattgggaaacgctgccctatgagcgtttttcgccgcatcag
gatttggtgtcggagcgtttggccgccttgtggcaggtgaaaagcggtttggccgacgtg
ttgattgtgccggtggccactgccatgcagaagctcgcgccggtgtcgtttctgctcggg
cgcacgttttggctgaaaacggggcagacgctggatgccgaatccttgcgcggcaatctg
gtcgatgcgggttacagccatgtttccaacgtggtggcttcgggcgaattcgccatgcgc
ggcggtattttggatattttcccgatgggttcggagctgccctaccgcttggatttgttc
ggcgacgaaatcgacagcatcaaaactttcgaccccgatacgcagcgcaccatcgcgccg
gtttccgaaatccgcctgttgccggcgcatgagttccccaccgacgacgacgcgcaaaaa
atcttccgcgcccgtttccgcgaggaaatcaacgccgaccaccacgccgccgccgtgtat
aaggcggtgagcaacggccatttcggcgcgggggtggaatattatctgccgctgtttttt
gaaaacgaattggccagcgtgttcgactatatcggcgatgaggcgctgtttgtctgcatc
ggcgacgtgcacgccgaagcctcgcgcttttgggcggacgtgaaatcgcgctttgcgatg
gcgcagggcgacgaaacctacccgcctttgccgccgcagcatttgtatctgagcgaagac
caattcgcaggccgtctgaaagcctacggccaaatcctgccggatttgaacggcaagcgc
cacgcgctgcccgatgtggcggtgaaccgccagtccgaaacgccgcttgccgcgctgcaa
aactttcagacggcctttaacggccgcattctgctcaccgccgaaagcgcggggcggcgc
gaaaccatgctcggttttttcgcccaacacggcctgaaaccgaaaagcgtggatggctgg
caggcgtttttaagcagtgatgcgccgctggcgattacggtgacgccgctggcgtatggc
tttcagacaggcacagtaggtcgggcatttatgcccgacgacaccggccatgccgatcac
tcaaccccgtcgggcatcaatgcccgacctacatcaccgattgccgttatcaccgaatcc
gacctctaccaatacgtcgccaaaagccgcaatgtgcgccgcaaaaaacacgcgcaggtt
tcagacggcctgttgcgcgatttggccgaaatcaacatcggcgatcccgtcgtccacgaa
gaacacggcatcggccgctatttgggtttggttacgctggatttgggcggcgaacctgcc
gaaatgatgctgctcgaatacgcgggcgaggcgcaattgtatgtgccggtttcgcagctg
catttaatcagccgctactcgggtcaggcacacgaaaatgtacaactgcacaaactcggc
agcggcgcgtggacgaaagccaaacgcaaagccgccgaaaaagcgcgcgacacggcggcg
gaactcctgaacctgtatgcccaacgcgcggcgcaggagggcttcaaattcgcgttcaac
gaagcggattatcaggcgttttcagacggcttcgagtacgaggaaaccgaagaccaagcc
gccgccatcgccgccaccatcaaggatttgacgcagggcaagccgatggacaggctgatt
tgcggcgacgtgggtttcggcaaaaccgaagtcgcgctgcgggcggcgtttgtggccgtg
atgggcggcaaacaggtggccgtgctcgcgccgaccacgcttttggtggagcaacatgcg
cagaatttcgccgaccgcttcgccgatttccctgtcaaagtggccagtctgtcgcgtttc
aacagcggcaaagccaccactgaaacgctcaaaggcatggccgacggcacggtggacatc
gttatcggcacgcacaaactggtgcaggacgacattcaattcaaaaacttaggcctggtc
atcatcgacgaagaacaccgtttcggcgtgcgccagaaagagcagctcaaacgcctgcgc
gccaacgtggatattctcacgatgaccgccacgccgattccgcgcacgctcagcatggcg
ctggaaggcctgcgcgatttctcgctgattaccaccgcgcccagccgccgtttggccgtg
aaaaccttcgtgaagccgttcagcgaaggcagcgtgcaggaagccgtgttgcgcgaactc
aaacgcggcgggcaggtttttttcctgcacaacgaagtggaaaccatagcaaacatgcgc
gaacggctggaaaccctgctgcccgaagcccgcatcggcgtggcgcacggccagttgcgc
gaacgcgagctggaacaagtgatgcgcgactttttacagcaaaaattcaatgtgttgctt
tgttccaccatcatcgaaaccggcatcgatattcccaatgccaacaccatcatcatcaac
cgcgccgataaattcggcttggcgcaactgcaccaactgcgcggacgcgtcggccgcagc
caccaccaagcctacgcctacctgctcacgcccgaatacatcaccaaagacgcggaaaaa
cggctcgacgccatcgccgccgccgacgaactgggcgcaggcttcacgctggccatgcag
gatttggaaatccgcggcgcgggcgaaatcctcggcgaaggccagagcggcgagatgatg
caggtcggctttacgctctacaccgaaatgctcaaacaggccgtgcgcgacctcaaaaaa
ggccgccagcccgatttggacgcgcccttgggcgtaaccaccgaaatcaaactgcacagc
cccgcgctgctgcccgaaagctactgccccgatattcacgaacggctggttttatacaaa
cgcctcgccacctgcgaaaccgaagcccaaatcaacgccgtgcacgaagagctggtcgac
cgcttcggcctgcccgagcaaccggtaaaaaccctgattgaaagccaccgcatccgccta
agcgccaaagcgatgggcattgatgcgatcgatgccaccggcgaagccgttaccctcacc
ttcggcaaacaccacaacctcgaccccgccgacatcatcatgctgatgcagagcaacaaa
aactggcgcatggccggcgccgacaaactgcgcgtgggcgcagtgtcggacgatgtggaa
acgcggattcacaccgtcaaagcggtgttgaagaaactggcgggggaataa
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