Neisseria dentiae: H3L92_10725
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Entry
H3L92_10725 CDS
T07671
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
ndn
Neisseria dentiae
Pathway
ndn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ndn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
H3L92_10725 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndn03021
]
H3L92_10725 (rpoB)
03400 DNA repair and recombination proteins [BR:
ndn03400
]
H3L92_10725 (rpoB)
Enzymes [BR:
ndn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
H3L92_10725 (rpoB)
Transcription machinery [BR:
ndn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
H3L92_10725 (rpoB)
DNA repair and recombination proteins [BR:
ndn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
H3L92_10725 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
SopD
Motif
Other DBs
NCBI-ProteinID:
QMT44883
LinkDB
All DBs
Position
complement(2299937..2304115)
Genome browser
AA seq
1392 aa
AA seq
DB search
MSYSFTEKKRIRKSFAKRANVLDVPFLLATQLDSYSKFLQLDKPFDQRNDDGLQAAFNSI
FPIVSHNGYARLEFVHYTLGEPLFDIPECQLRGITYAAPLRARIRLVILDKESSKPTVKE
VRENEVYMGEIPLMTPSGSFVINGTERVIVSQLHRSPGVFFEHDRGKTHSSGKLLFSARI
IPYRGSWLDFEFDPKDLLYFRIDRRRKMPVTILLKALGYNNEQILDTFYDKETFYLSKNG
VQTDLIAGRLKGETAKLDIVDKEGNVLVAKGKRITAKNIRDISNAGLTRLDVDPESLLGK
VLATDLIVPDTGEVLAVANDEITEELLAKFDIHGIEKIETLYINELDQGGYISNTLRTDE
TADQQAARVAIYRMMRPGEPPTEEAVELLFNRLFFNEDSYDLSRVGRMKFNTRTYEQKLS
EAQAESWYGRLLNQTFAGAAEKGGYVLSVEDIVASIATLVELRNGHGEVDDIDHLGNRRV
RSVGELTENQFRSGLARVERAVKERLNQAESENLMPHDLINAKPVSAAIKEFFGSSQLSQ
FMDQTNPLSEITHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLIN
SLSVFARTNEYGFLETPYRRVVDGKVTDEIDYLSAIEEGRYVIAQANAELDSDGRLTGDL
ITCREKGETIMATADRVQYMDVATGQVVSVAASLIPFLEHDDANRALMGANMQRQAVPCL
RPEKPMVGTGIERSVAVDSATAIVARRGGVVEYVDANRIVVRVHDDEATAGEVGVDIYNL
VKFTRSNQSTNINQRPVVKAGDVLQRGDVVADGASTDLGELALGQNMTIAFMPWNGYNYE
DSILISEKVAADDRYTSIHIEELNVVARDTKLGAEDITRDIPNLSERMQNRLDESGIVYI
GAEVEAGDVLVGKVTPKGETQLTPEEKLLRAIFGEKASDVKDTSLRMPTGMSGTVIDVQV
FTREGIQRDKRAQSIIDAELKRYRQDLSDQLRIFDNDAFSRIERMIVGQKANGGPLKLAK
GSEITAEYLASLPSKHDWFDIRMSDESLAKQLELIKVSLQQKREEADELYEIKKKKLTQG
DELQPGVQKMVKVFIAIKRRLQAGDKMAGRHGNKGVVSRILPVEDMPYMADGRPVDIVLN
PLGVPSRMNIGQILEVHLGWAAKGIGERIDRMLAEQRQASEIRAFLNQLYNGSGKQENLD
ELSDDEILALAANLKRGATFASPVFDGAKENEIYSMLDLAYPNEDPEVQKLGFNDSKTQI
TLYDGRSGEAFDRKVTVGVMHYLKLHHLVDEKMHARSTGPYSLVTQQPLGGKAQFGGQRF
GEMEVWALEAYGAAYTLQEMLTVKSDDVTGRTKMYENIVKGEHKIDAGMPESFNVLVKEI
RSLGLDIDLERY
NT seq
4179 nt
NT seq
+upstream
nt +downstream
nt
atgagttattcttttaccgagaaaaaacgtatccgtaagagttttgccaaacgggccaat
gtattggacgtgccgtttttgctggcaactcagctggattcttattccaaatttttgcag
ttggacaaaccgttcgaccagcgcaacgatgacggccttcaggcggccttcaactctatt
ttcccgattgtgagccacaacggttatgcgcgtttggaattcgtgcactacaccttgggt
gagccgctatttgatattcccgaatgccagttgcgcggcatcacttatgctgctccgttg
cgcgcacgcatccgtttggtaattttggataaggaatcttccaagcctacggtaaaagaa
gtgcgtgaaaacgaggtgtatatgggtgaaatcccgttgatgacacccagcggttcgttt
gtgatcaacggtaccgaacgtgtgattgtgtcgcagcttcaccgctcgccgggcgtgttt
ttcgagcacgatcgcggcaaaacacactcttccggtaagttattgttttctgcgcgtatt
attccctaccgcggctcttggctggatttcgagttcgatccgaaagacttgctgtatttc
cgtatcgaccgccgccgcaaaatgccggtaaccattctgctgaaagccttgggctataac
aacgagcagattctggatactttctacgacaaagaaactttctatctttctaaaaacggc
gtgcaaaccgatttgatcgcaggccgtctgaaaggcgaaactgccaaactcgatatcgtt
gataaagaaggcaacgtattggttgccaaaggcaaacgcattaccgccaaaaatatccgc
gatatcagcaatgccggtctgacccgcttggacgttgatcccgaaagcctgttgggtaaa
gtgttggcgaccgatttaatcgtgcccgacacaggcgaagtgctggctgtggccaatgac
gaaatcaccgaagagctgctggcaaaattcgatatacatggcatcgagaaaatcgaaacc
ctgtatatcaacgaattggatcagggcggttatatttccaacaccctgcgtaccgacgaa
accgccgaccaacaggccgcgcgcgtggcgatttaccgcatgatgcgcccgggtgagccg
cccaccgaagaggcggtggagctgttgttcaaccgtttgttcttcaatgaagacagctac
gatttgtcgcgcgtaggccgtatgaaattcaacacccgcacctacgagcagaaactgagc
gaagcgcaggccgaatcatggtatggccgtttgttgaaccaaacctttgccggtgcggcc
gaaaaaggcggctatgtgctgagcgtggaagacatcgtggcttccatcgccactttggtc
gagctgcgcaacggccacggcgaagtggacgacatcgaccacttgggcaaccgccgcgtg
cgttcggtaggcgaattgaccgaaaaccagttccgcagcggcttggcacgtgtggagcgt
gccgtgaaagagcgtttgaaccaagcggaatcggaaaacctgatgccgcacgatttgatt
aacgccaaacctgtttccgccgccatcaaagaattcttcggctccagccagttgagccag
tttatggaccaaaccaacccgttgtcggaaatcacccacaaacgccgcgtatcggcgctc
ggcccgggcggtttgacccgcgaacgcgcaggtttcgaggtgcgcgacgtacacccgacc
cactacggccgcgtgtgtccgattgaaacgcccgaaggcccgaacatcggtttgatcaac
tcgctgtcggtatttgcccgcaccaacgaatacggtttcttggaaaccccctaccgccgc
gtggtggacggcaaggttaccgacgaaatcgactatctgtcggccattgaagaaggccgc
tatgtgattgcacaggccaacgccgaattggattcagacggccgcttaaccggcgatttg
attacctgccgcgaaaaaggcgaaaccattatggccaccgccgaccgcgtgcaatatatg
gacgtggcaaccggccaggtagtgtccgtggccgcctcgctgattccgtttttggagcac
gacgacgccaaccgcgccttgatgggtgcgaacatgcagcgtcaagccgtgccgtgcctg
cgccccgaaaaaccgatggtgggcaccggcatcgagcgttcggtagccgttgactcggcc
accgccatcgtggcccgccgcggcggtgtggtggaatatgtggacgccaaccgtatcgtg
gtgcgcgtacacgacgacgaagccactgccggcgaagtgggtgtggacatctacaatctg
gtgaaattcacccgttccaaccaatcgaccaacatcaaccagcgccccgtggttaaagcg
ggcgacgtgctgcaacgcggcgacgtggtggccgatggcgcatccaccgatttgggcgaa
ctggctttgggtcagaacatgaccatcgccttcatgccgtggaacggttacaactatgaa
gactcgattctgatttcagaaaaagtggccgccgacgaccgctacacctccatccacatc
gaagagctgaacgtggtggcgcgcgacaccaaactgggcgcggaagacattacccgcgat
attcccaacctgtcggagcgtatgcagaaccgtttggacgaatcgggcatcgtgtatatc
ggtgccgaagtggaggcgggcgacgtgctggtgggtaaagtgacccccaaaggcgaaacc
cagcttacccccgaagaaaaactgctgcgcgccatcttcggcgaaaaagcatccgacgtg
aaagacacctcactgcgtatgcccaccggcatgagcggcaccgtaatcgacgtgcaggtg
tttacccgcgaaggcatccagcgcgacaaacgcgcccagtcgattatcgatgccgagctg
aaacgctaccgccaagacttgagcgaccagctgcgtattttcgacaacgacgctttcagc
cgtatcgagcgcatgattgttggccaaaaagccaacggcggcccgttgaagctggccaaa
ggcagcgaaatcaccgccgaatatctggcttcactgccgagcaagcacgactggttcgac
atccgcatgagcgacgaatcgctggccaagcagcttgagctgattaaagtcagcctgcag
caaaaacgcgaagaagccgacgaactgtatgaaatcaagaagaaaaagctgacccagggc
gacgaattgcaacccggcgtgcaaaaaatggtgaaagtgtttatcgccatcaaacgccgc
ctgcaagccggcgacaaaatggccggccgccacggtaacaaaggtgtggtatcgcgcatt
ctgccggtggaagacatgccctacatggccgacggccgccccgtggacatcgtgttgaac
ccgctgggcgtaccgagccgtatgaacatcggccagattctcgaagtgcacttgggttgg
gcggcgaaaggcatcggcgagcgtatcgaccgtatgctggccgagcagcgccaagcaagt
gaaatccgcgccttcctgaaccagctctataacggcagcggcaaacaggaaaacctcgac
gagttgagcgacgacgaaatcctggcgttggccgccaacctgaaacgcggtgctactttt
gcttcgccggtgttcgacggtgccaaagaaaacgaaatttacagcatgttggatttggcc
tacccgaacgaagaccctgaagttcagaaactcggctttaacgacagcaaaacccaaatc
accctttacgacggccgttccggcgaagcgttcgaccgcaaagttaccgtcggcgtgatg
cactacctgaaactgcaccacttggttgacgagaaaatgcacgcccgctcgaccggcccg
tacagcctcgttacccagcagccgttgggcggtaaggcgcagttcggcggccagcgtttc
ggtgagatggaggtgtgggcgctcgaagcctacggcgccgcctacacgctgcaagagatg
ctgaccgtgaagtccgacgacgtaaccggtcgtaccaaaatgtatgaaaacattgttaaa
ggcgagcacaaaatcgatgccggtatgcccgaatccttcaacgtattggttaaagaaatc
cgttcgctgggtttggatattgatttggaacgctattga
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