Nonlabens dokdonensis: DDD_0030
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Entry
DDD_0030 CDS
T02441
Symbol
trmU
Name
(GenBank) tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase
KO
K00566
tRNA-uridine 2-sulfurtransferase [EC:
2.8.1.13
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo04122
Sulfur relay system
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04122 Sulfur relay system
DDD_0030 (trmU)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ndo03016
]
DDD_0030 (trmU)
Enzymes [BR:
ndo01000
]
2. Transferases
2.8 Transferring sulfur-containing groups
2.8.1 Sulfurtransferases
2.8.1.13 tRNA-uridine 2-sulfurtransferase
DDD_0030 (trmU)
Transfer RNA biogenesis [BR:
ndo03016
]
Prokaryotic type
tRNA modification factors
Thiolation factors
DDD_0030 (trmU)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_Me_trans
tRNA_Me_trans_M
tRNA_Me_trans_C
NAD_synthase
Asn_synthase
ThiI
QueC
ATP_bind_3
DUF7411
Arginosuc_synth
Motif
Other DBs
NCBI-ProteinID:
AGC75157
UniProt:
L7W4R9
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All DBs
Position
complement(29838..31034)
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AA seq
398 aa
AA seq
DB search
MAKVVVGLSGGVDSSVAAYLLKEQGHEVIGLFMKNWHDDTVTISDECPWLEDSNDAMLVA
DKLGIPFQTVDLSDQYKKRIVDYMFDEYARGRTPNPDVLCNREIKFDVFMDIALELGADF
VATGHYCQKTTTVENGQEVHHLIGGADANKDQSYFLCQVSQKQLAKTLFPIGHLQKPQVR
EIAAAQNLITAGKKDSQGLCFIGKVRLPDFLQQQLQHKAGDIVEIDAQTSREKMLELVPV
EEMGDENELVSLSRKRKYHPTEGKVVGQHQGAHYFTRGQRKGLAVGGTPEPLFVIETDVL
TNTIYVGQGKQHPGLYRRGLFVTADEMHWIREDLEIAEGETMEVMARIRYRQTLEKATLH
RAENGLYVIFDNEQSAISPGQFVAWYQENECLGSGVIS
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaagtagtagtaggactttctggcggcgtagactctagcgttgccgcatattta
ttaaaagagcaaggtcatgaggtgatcggtctgtttatgaaaaactggcatgatgatacc
gttaccataagtgatgaatgtccatggttagaagactctaacgatgcaatgctcgtcgca
gataagttagggattccttttcagacggtagatttgagcgatcaatataaaaaacgtatt
gtagattatatgtttgacgagtacgctcgtggccgcacacctaatccagatgtactttgt
aatcgggagatcaagtttgatgtctttatggatattgcccttgaactaggagcagacttt
gtcgcaacaggacattattgccagaaaactacaacagtagaaaacggtcaagaagttcac
catttaatcggtggcgcagacgctaataaagatcaaagttattttttatgtcaggtatcg
caaaaacagcttgccaaaacccttttcccaattggccatcttcaaaagcctcaagtaaga
gaaattgccgctgcacagaacttgattaccgctggtaaaaaagattctcaaggattgtgc
tttataggtaaagtacgtttaccagattttttacaacagcaattacaacataaggctggc
gatatcgtagagatagacgcacaaactagtcgtgagaaaatgttggaattagttccagtg
gaagaaatgggagatgagaatgaattggtctcgctttcgcgaaagcggaaataccatccc
acagaaggaaaggtagttgggcagcatcaaggagcacattattttactcgtggacagcgc
aaaggactcgccgtaggaggaacacctgagccactttttgtgatagaaactgatgtactt
acgaacactatttacgtggggcaaggaaaacaacatcctggcttataccgtcgaggactt
tttgtaaccgcagatgaaatgcactggattagagaagatctggaaatagcagaaggtgaa
acgatggaagtaatggcgcgcatacgttaccgtcagacgcttgaaaaagcaacgctacat
cgagcagaaaatggattgtacgttatttttgataacgagcaaagcgccatttctcctgga
caatttgtagcttggtatcaagaaaatgagtgtttaggtagcggagtgataagttaa
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