Nonlabens dokdonensis: DDD_0234
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Entry
DDD_0234 CDS
T02441
Name
(GenBank) ATP-dependent RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD_0234
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndo03019
]
DDD_0234
Enzymes [BR:
ndo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDD_0234
Messenger RNA biogenesis [BR:
ndo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDD_0234
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
ERCC3_RAD25_C
HEM4
CMS1
Utp25_C
Motif
Other DBs
NCBI-ProteinID:
AGC75361
UniProt:
L7W6G5
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All DBs
Position
279211..280488
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AA seq
425 aa
AA seq
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MTFKELGLVEPILRALQDQGYERPTPIQAQAIPVLLEGKDLLGCAQTGTGKTAAFSIPIV
QDLYNRTPPKGKRRIKTLVVTPTRELAIQIGENFTAYTKYTDIKNTVIFGGVKQTSQVYA
LHQGIDVLVATPGRLLDLINQRYITLDHIEHFVLDEADQMLDMGFIHDIKKLLKLLPQKR
QSLFFSATMPSAIVKLSNEILGNPARVTIEPEKTTAEKVEQRIYHVNKKNKTKLLIDLLS
NELNDSTLVFSRTKHGANKIVKDLDKAGIKSAAIHGNKSQAARQRALQQFKDGDLQALIA
TDIAARGIDIDELSYVVNYDLPNVPESYVHRIGRTGRAGASGLAVSFCMLEERPFLKDIE
KLIRTSIPTVDDHDFEFKMEDAAEPSLKKQGGGRGRSQGRNNNRSKSKSSSSKSGGNRNR
SRNSR
NT seq
1278 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaagaattagggttagttgaacccatcttgcgagctttgcaagaccaagga
tatgaacgtcctacacctattcaagcacaagccattccagttttattagaaggaaaagat
ttactaggctgtgcacagactggaacaggtaaaactgccgcattttccattcccatcgtt
caagatttatacaatcgcacaccgcctaagggtaaaagacgcatcaaaacattagtggtt
actcctaccagagaactggctatacaaataggtgagaactttaccgcttatactaagtat
accgatattaaaaatacggtcatctttggtggagtgaagcaaacttctcaagtttatgct
ttacatcaaggaatagacgtactagttgctacacctggaagattattagatttaatcaac
cagcgctacataacacttgatcatattgagcattttgtactggacgaagcagaccaaatg
ctagacatgggttttatccatgacatcaagaagttattaaaacttttacctcaaaagaga
cagtcattgttctttagtgcaaccatgcctagtgcgatcgtaaaactttctaatgaaatt
ttaggaaatccggcaagagtcactattgaaccagaaaaaactactgccgaaaaagtagaa
cagcgcatttaccatgtaaataaaaagaataagaccaaactcttgatcgatttattgagc
aatgagctcaatgactcgacacttgttttttctagaactaaacatggagctaataaaata
gtgaaggatctggataaagctggtattaaaagtgccgctatacacggtaataaatctcaa
gctgcaaggcaaagagctttacaacagtttaaagatggagatttacaagcacttatcgca
acagatattgctgctcgtggaatcgatattgatgaattgagctacgtagttaactatgac
ttacctaatgtaccagaatcttatgtacatagaataggtagaactggtagagctggcgca
agcggtcttgctgtttctttctgtatgctagaagaacgtcctttcttaaaagacattgaa
aaactgatcagaacctctattcctacagtagatgatcatgattttgaatttaaaatggaa
gacgcggcagaacctagtctaaaaaagcaaggtggtggccgtggtcgctctcagggaaga
aataacaatcgatctaaaagtaaaagttcctcttcaaaaagtggaggcaatcgcaaccgc
agccgaaactctaggtag
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