Nonlabens dokdonensis: DDD_0298
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Entry
DDD_0298 CDS
T02441
Symbol
ffh
Name
(GenBank) signal recognition protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo02024
Quorum sensing
ndo03060
Protein export
ndo03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
DDD_0298 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
DDD_0298 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
DDD_0298 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
ndo02044
]
DDD_0298 (ffh)
Enzymes [BR:
ndo01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
DDD_0298 (ffh)
Secretion system [BR:
ndo02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
DDD_0298 (ffh)
Eukaryotic Sec-SRP protein
DDD_0298 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
cobW
Zeta_toxin
CbiA
AAA_22
AAA_17
APS_kinase
AAA_33
AAA_24
6PF2K
CLP1_P
KTI12
AAA_31
TsaE
AAA_18
NACHT
NPHP3_N
ATP_bind_1
DO-GTPase1
Motif
Other DBs
NCBI-ProteinID:
AGC75425
UniProt:
L7W1R9
LinkDB
All DBs
Position
343124..344416
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AA seq
430 aa
AA seq
DB search
MHVLKGHGSITEVNVADTLKEIRRALVDADVNYKIAKEFTSRAKEKALGQGVLTTLKPGQ
LLTKIVKDELTELMGGDAIGLNLSGNPTVILMSGLQGSGKTTFSGKLANFLKNKKSKKPL
LVACDIYRPAAIDQLHVVGESVGVEVFSNREEKNPVKISEAAIAYAKANGFNAVIIDTAG
RLAVDEQMMTEIADVHAAIKPQETLFVVDAMTGQDAVNTAKAFNDRLNFDGVVLTKLDGD
TRGGAALSIKTVVNKPIKFIGTGEKMEALDVFYPERMADRILGMGDVVSLVERAQEQYDE
EEARKLSKKIAKNQFGFDDFLSQIQQIKKMGNMKDLMGMIPGAGKMLKDVDIDDDAFKGI
EAIIHSMTVEERTKPQVINGSRKKRIAKGSGTTVTEVNQLLKQFDQMSKMMKMMQGGKGK
AMMNALGKMR
NT seq
1293 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtccttaagggacatggaagcattaccgaagttaacgttgcagatactcttaaa
gaaatacgtcgtgccttagttgatgctgacgtcaactataaaatagctaaagagtttact
tctcgagctaaagaaaaagccctaggtcaaggtgtacttactacattaaaaccaggacaa
ttactcactaaaattgtaaaagatgagcttactgagctcatgggtggtgatgctatagga
ttaaacctcagtggaaatcctacggtcattttaatgtctggacttcaaggatctggtaaa
acaactttttctggaaagcttgcaaattttttgaagaacaaaaaaagtaaaaaaccactt
cttgttgcttgtgacatttatcgtccagcggcaatagatcaattacacgttgtaggagaa
agcgtaggcgtagaagtattttctaatcgtgaagagaaaaacccagttaaaatatctgaa
gctgcaattgcttatgccaaagcaaacggttttaatgcagtaatcatagatactgctggt
cgtctggctgtagatgagcaaatgatgaccgagatagcagatgttcatgctgctataaaa
cctcaagaaacactatttgtcgtggatgcgatgaccggtcaagatgcggtaaacactgca
aaagcttttaatgatcgtcttaactttgacggtgttgtacttactaaattagacggtgat
acacgcggtggtgctgccctatcgattaaaacagtagttaataaacctattaagtttata
ggtaccggtgagaaaatggaagctctggatgttttctatccagaacgtatggcagatcgt
atcctaggaatgggagacgttgtctcacttgtggaacgcgcacaagagcagtacgacgag
gaagaggctcgtaaattgagtaagaaaattgccaaaaatcaatttggctttgatgatttc
ctttctcaaatccagcaaatcaagaagatgggtaatatgaaagatcttatgggtatgatt
cctggtgcaggaaaaatgcttaaagatgttgatatagatgatgatgcttttaaaggaata
gaagctattatacactccatgactgttgaggagcgcacaaaaccacaagttataaacggt
tctcgtaaaaaacgtattgcaaaaggtagcggtacaacagtaacagaagtaaatcaatta
ctgaagcaatttgaccagatgagtaaaatgatgaagatgatgcaaggtggtaaaggaaaa
gcaatgatgaacgccttagggaaaatgcgttag
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