Nonlabens dokdonensis: DDD_0469
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Entry
DDD_0469 CDS
T02441
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD_0469 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndo03021
]
DDD_0469 (rho)
03019 Messenger RNA biogenesis [BR:
ndo03019
]
DDD_0469 (rho)
Transcription machinery [BR:
ndo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
DDD_0469 (rho)
Messenger RNA biogenesis [BR:
ndo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
DDD_0469 (rho)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_25
NACHT
OB_RNB
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGC75596
UniProt:
L7W725
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All DBs
Position
532009..533724
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AA seq
571 aa
AA seq
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MFQIADLKSKKLPELQEIAKGLNVPKIKSLRKLDLVYKILDLQAENPEVVKSLDIEATPE
TDKKEAPVKKVAPKKLAAKKERKPRAPKKETSKESKSDEKDDFVITEETLKGRKDPSRPN
PRPRKEKKSSKSKSKDQTDSQKDAPKETTDSKDNSSNDSSDKNDNRNSRQKNTRSNSNQA
NVPKGNKDTRNRYRDPDFEFDGIIESEGVLDMMPDGYGFLRSSDYNYLASPDDIYVSQSQ
IRLFGLKTGDTVLGMVRPPKEGEKYFPLIKISQINGLDPKVVRDRVSFEHLTPLFPEEKF
DLAGRRASISTRVMDLFAPIGKGQRGMIVAQPKTGKTMLLKDIANAIAANNPEVYQLILL
IDERPEEVTDMQRNVDGEVIASTFDKEAHDHVKVANIVLEKAKRMVECGHDVVILLDSIT
RLARAYNTVQPASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLSIIATALTETGSKMD
EVIFEEFKGTGNMELQLDRNISNRRVFPAIDLTSSSTRRDDLLLDEKTMKFMWILRKYLA
DMNPVEAMEFISQKIKQTRNNEEFLATINDD
NT seq
1716 nt
NT seq
+upstream
nt +downstream
nt
atgtttcaaatagctgatttaaaatcaaaaaaacttcctgaattacaggaaatcgcaaaa
ggtcttaatgttcctaaaattaaatcattacgcaaactagacctggtctataaaatacta
gacctgcaagcagaaaatccagaggttgtaaaaagtctcgatatagaagctactccagaa
acggataaaaaagaggctcctgtaaaaaaagtagctcctaaaaaacttgcggcaaaaaag
gaaagaaaacctagagctcctaaaaaagaaacttcaaaagaatcaaaatctgatgagaaa
gatgattttgtaattaccgaagaaacattaaaaggacgcaaagaccctagtaggcctaat
cctagacctagaaaagaaaagaaatcttctaaaagcaaatcaaaggatcaaacagattct
caaaaagacgccccaaaggagactactgattccaaagataattctagcaacgacagttca
gataaaaacgacaaccgtaacagccgtcaaaaaaatacacgcagcaacagtaatcaggca
aacgttcctaaaggaaacaaagacacgcgcaaccgttaccgcgatcctgattttgaattt
gatggaatcatagaaagtgaaggtgttcttgatatgatgccagatggatatggtttcttg
cgcagtagtgattacaattatctagccagtcctgatgatatctacgtatcacaatcgcaa
ataagacttttcggtcttaaaactggtgatacagttctaggtatggtacgtcctcctaaa
gaaggagaaaagtacttcccattaattaagatttctcaaattaatggtctggaccctaaa
gtagtgcgtgatcgtgtttcttttgagcaccttacacctcttttcccagaagaaaaattt
gaccttgctggtagacgtgctagtatttctacacgagtgatggatctttttgcccctata
ggaaaaggacagcgtgggatgatagtagcacaacctaaaacaggtaaaaccatgctactt
aaagatattgcaaacgcgatagcagcaaataaccctgaagtatatcagcttatcttacta
atagacgagagaccggaagaagtaacagatatgcaacgcaatgtagacggtgaggtaatt
gcctctacatttgataaagaagcacatgaccatgtaaaagtggctaacattgttctagaa
aaagcaaaacgtatggtagaatgtggtcacgatgttgtgattttactagactcgattaca
cgtcttgctcgtgcttataatacagttcaacctgcaagtggtaaagtactttctggtggt
gtagatgcaaatgctttacataaacctaaacgtttctttggtgcggctcgtaatattgaa
ggtggtggatctttatctatcatcgcaacagcattgacagaaactggttctaaaatggac
gaggtaatttttgaagaatttaaaggaacaggtaacatggagcttcaactggatagaaat
atatctaaccgtcgtgtgttccctgctattgatcttacttcttcatctacacgtcgtgat
gatttattgctagacgagaaaacaatgaaattcatgtggattttacgcaagtatctggct
gacatgaatcctgtggaagcaatggagttcatttctcaaaagatcaagcaaactcgtaat
aacgaagaatttcttgctacgattaacgatgattaa
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