Nonlabens dokdonensis: DDD_1639
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Entry
DDD_1639 CDS
T02441
Symbol
recQ1
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD_1639 (recQ1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndo03019
]
DDD_1639 (recQ1)
03400 DNA repair and recombination proteins [BR:
ndo03400
]
DDD_1639 (recQ1)
Enzymes [BR:
ndo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDD_1639 (recQ1)
Messenger RNA biogenesis [BR:
ndo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDD_1639 (recQ1)
DNA repair and recombination proteins [BR:
ndo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DDD_1639 (recQ1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HTH_40
RecQ_Zn_bind
HRDC
ResIII
Helicase_Sgs1
DUF4364
zf-CXXC
HTH_45
Motif
Other DBs
NCBI-ProteinID:
AGC76766
UniProt:
L7WA94
LinkDB
All DBs
Position
complement(1758609..1760771)
Genome browser
AA seq
720 aa
AA seq
DB search
MKKLELLKKYFGYDSFRPLQEQVIDDVIAGKDLMVVMPTGGGKSMCFQLPSLLLDGITLV
VSPLIALMKDQVDALRANGIPASYFNSSQDAKQQEEMLQELRSGDLKLIYAAPESIGLLN
NHLQGIPVSLIAVDEAHCISTWGHDFRPAYTQLSYFKTSFPEANLIALTATADRATRADI
KKQLGIQNAQEYVASFDRPNLTLEVRPGNNRLQQMRRFLKKNKDESGIIYCLSRKTCESI
ASKLTAYGFDAAAYHAGLSHEERENVQEIFIKDDLKIVCATIAFGMGIDKSNVRFVIHYN
MPKNIEGYYQEIGRAGRDGLNSHALLFHSYADVIQLRKFADGSGNAEVQIAKLERMKQFA
EALTCRRKMLLSYFNEYLDEDCGNCDVCLNKPDFFDATLQAQKALSAIVRTGERASLNLL
IDVLRGAQNAAVMESGFQAIKTYGAGKETSWNDWQQYIVQMINQGLIEIAFHEQNHLKIT
PQGKEVLFDGRKVSLAVIPKPEELAAKRAQQTQEALPTEVNRDLYEALRKTRLQLANSSN
LAPYMIFSDATLKDMAARIPLEDNEFADIVGVGTHKHDTYGVPFLRMLKEWKDSRKEDFV
YREEVAKPKRKKKKASGPKKDTVMESVKLFWDGKTVEEVAEIRGFQPSTILAHLTKRYES
HNDIDLEKLIAGKDYDLIAEDFDKVKDYDSLKPVYEHFDGQIDYGSLRVGLTLLKEKMVV
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaaattagaactccttaagaagtattttggttatgatagctttaggccactgcaa
gaacaagtcatagacgatgttattgctggcaaagacctaatggtggtcatgcctacaggt
ggaggaaaatcaatgtgtttccaactgccatccttacttctcgatggaatcactttagtc
gtgtcgccactaattgctttgatgaaagatcaagtggatgcgttgcgagctaatggtatt
cctgcttcctacttcaacagctcacaagatgcaaagcagcaagaagagatgctgcaagaa
ttacggtcaggtgatcttaaattgatttatgcagctccagaaagcataggtttattgaac
aatcatttacaaggaattcctgtttctttaattgctgtagatgaggcacattgtatctct
acatggggacacgattttagacctgcttacacgcaactgtcttactttaaaactagtttt
ccagaggctaacctcatcgcacttactgccactgcagatcgtgcgactcgtgctgatatt
aaaaaacaactaggtattcaaaatgctcaggaatatgttgcttcctttgaccgtcctaac
ctaacgctggaagtgcgaccagggaataaccgcttacagcaaatgcgtcgctttttaaaa
aagaacaaagatgagtctggaatcatttattgtttgagccgtaaaacttgcgaatcaata
gccagtaaattaacagcctacggttttgatgctgcggcttatcatgctggactaagtcat
gaagaacgtgaaaatgttcaagaaatctttattaaagatgatcttaaaatagtttgtgcg
accattgcttttgggatgggaatcgataaatctaatgtgcgttttgtaattcattacaat
atgcccaagaacattgaaggatattatcaagaaataggtcgtgcaggtcgcgatgggtta
aattctcatgccttattatttcacagctatgcagatgtgatccaactgcgcaaatttgct
gatggaagcggtaatgccgaagttcaaatagcaaagctagagcgcatgaagcaatttgct
gaagcgcttacttgcaggagaaaaatgctgctttcttattttaatgaatacctagatgaa
gattgtggtaactgcgatgtttgcttgaacaagccagacttctttgatgctaccttacaa
gctcaaaaagcattaagcgccatcgttagaacaggagaacgagcttctcttaatttattg
atcgatgtattgcgtggtgctcaaaatgcagccgtaatggaaagtggttttcaagctatt
aaaacctatggcgctggtaaagaaacctcatggaacgactggcaacaatacattgttcaa
atgatcaatcaaggcttgatagagattgcgtttcatgaacaaaatcacttaaaaataaca
ccacaaggaaaagaagtactttttgatggtcgcaaagtctcactagctgtcattcctaaa
ccagaagaactggctgccaaaagagctcaacaaactcaagaagctttacctactgaagtg
aatcgcgatctttatgaagcattgcgtaaaacaagactacaactagctaattccagcaat
cttgcaccttatatgatttttagtgacgctacgttaaaagatatggcggcaagaatacct
ctggaagataatgaatttgcagatatcgtaggagtaggaacacataaacacgacacgtac
ggcgttccttttttaagaatgctcaaagaatggaaagattctcgtaaagaagattttgtt
taccgagaagaagtcgcaaaacctaaacgtaaaaagaaaaaagcttcaggccctaaaaaa
gataccgtaatggaaagtgttaagcttttctgggatggaaaaacggtagaagaagtagcc
gaaataagagggttccagccgtctacaatactagcgcatctcacaaaaagatatgaatct
cataacgacatcgatctagaaaaattgattgctggaaaagattacgatctaatcgctgaa
gattttgacaaagtaaaagattacgacagtctcaaaccagtttacgaacattttgatgga
cagatcgattatggctcactgcgagttggtcttactttgttaaaagagaaaatggtggtt
taa
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