Nonlabens dokdonensis: DDD_1809
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Entry
DDD_1809 CDS
T02441
Symbol
dnaE
Name
(GenBank) DNA polymerase III
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03030
DNA replication
ndo03430
Mismatch repair
ndo03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DDD_1809 (dnaE)
03430 Mismatch repair
DDD_1809 (dnaE)
03440 Homologous recombination
DDD_1809 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndo03032
]
DDD_1809 (dnaE)
03400 DNA repair and recombination proteins [BR:
ndo03400
]
DDD_1809 (dnaE)
Enzymes [BR:
ndo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
DDD_1809 (dnaE)
DNA replication proteins [BR:
ndo03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
DDD_1809 (dnaE)
DNA repair and recombination proteins [BR:
ndo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
DDD_1809 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
AGC76936
UniProt:
L7WAP6
LinkDB
All DBs
Position
complement(1939170..1943519)
Genome browser
AA seq
1449 aa
AA seq
DB search
MYLIFDTETTGLPKRWDAPYTDVDNWPRVIQIAWQLHDAMGNLIEAQDYLIQPDGFDIPY
DAERIHGISTALAQKDGIPLEEMLAKFNIALSKTKFVVGQNLKFDLNVTGAEFERTQIGN
DLQELPVLDTCTEHTANLCKIPGGRYGKFKLPTLTELHEFLFQQPFGEAHNATADVEATT
RCFLELIRKEQYSLAQLGVEDGYFSRFRESNPTTIQPVGIPHVNLKKASEKLKTDAAPEI
TKEEIKENLNELNEVKFAHLHSHSQFSILQSTASVKDLVDAAAANDMPAVAMTDHANMMG
AFHFVKAVKAYNASLVDAEDGSHRSPIKPIIGCEFQVCEDMHDRTHKDNGYQIVILAKNK
NGYHNLAKMASKAYTEGFYYMPRIDKKLVEEYKEDLIVLTGNMYGEVPSKILNLGEKQAE
EALLWWKEHFGEDLYIEIMRHGQEDENRANEVLLQFAQKHEVKIVATNNTYYIHKDDANA
HDILLCVKDNEKQATPIGRGRGYRYGLPNQEYYYKSDLEMKELFKDLPEAIFNVQEVVDK
IEAYELARDVLLPAFDIPAEFVDANDAIEKTKNGENNYLRHLTYEGAKIRYGEITPEIKE
RLEFELDTIARTGYPGYFLITWDFIKAAREMDVAVGPGRGSAAGSVVAYCLWITNVDPIH
YDLLFERFLNPDRVSMPDIDIDFDDENRHKVMDYVIEKYGASQVAQIITYGTMAAKSSIR
DTARALDLPLQDADRVAKLIPDFAKLKKIFALEDNEIGSKFRGDDADMVRELRGLAEGND
LTAETLKQARILEGSVRNTGVHACGVIITPDDLTNFVPVATAKNSDLYVTQFDNEVVESA
GLLKMDFLGLKTLSQIKDTVAIIKERHGIELDIESIPLDDEKTYELFQRGETTAIFQYES
VGMQKYMRELKPTQFADLIAMNALYRPGPLEYIPEFIDRKHGRKEIVYDLDAMEEYLQET
YGITVYQEQVMLLSQKLANFSKGDADVLRKAMGKKQMATLQKMKPQFLDAGEGNGHDRTI
LEKVWKDWEAFASYAFNKSHSTCYAWIAYQTAYLKANYGAEFMAATLSNNMNQIKDVTKF
MDECRRMGLDVLGPDVNESNYKFTVNPKGAIRFGMGAVKGLGHGAVMTIIDNRKDGPYKS
IFDMAKRIDLRAANKKSFEALALSGGFDGLGGENRAQFFYEFENGQIFLEQVVKYAQKFQ
ENENSAQVSLFGEASDVQIPEPQLPICEDWGTMEKLKREKEVVGIYISGHPLDDYKKEIE
FFCNANLAAMKDLTPLVNRELTFCGVITEARHMMSKANKPWGMFTMEDYEETYEFRMFGE
DYLKFRHFLIPNTFLHAKVKIQQGWIDKNTGKPRDPRILFTAMSQLQDVMSQAAKKLTIE
LHVSEVLEERIELLKETLDKHQGDHRLYFNLKDHEEKISLDMSARLQKVNVTAELLEVLD
ENEITYGVG
NT seq
4350 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatatttgacacagaaactaccggattacctaaaagatgggacgcaccatat
acagatgttgacaactggccacgtgtgattcaaatcgcctggcaattacatgatgcgatg
ggtaaccttatcgaggcgcaagattatttgatacagccagacggttttgacattccttat
gatgcagagcgaattcacggtatttctacagcattggctcaaaaggatgggatccctcta
gaagaaatgctggctaaattcaacattgcgttgagtaaaacaaaatttgtagtaggtcaa
aatttaaaatttgacctcaacgttacaggagccgagtttgaacgcacgcaaataggtaac
gatcttcaagagctacctgttctagacacttgtacagagcacactgcaaacctttgtaaa
atccctggtggccgttatggaaagttcaaacttcctacgcttacagagttgcatgaattt
ttatttcagcaaccttttggcgaggcacataatgcgacggcagatgttgaagcaacgacc
agatgtttcctagaacttattagaaaggagcaatactcactggctcaactaggagtagaa
gatggttatttttctcgctttcgcgaaagcaaccctaccactatccaaccggtaggaata
ccacatgtcaatcttaaaaaagcatctgaaaaacttaaaactgatgctgcaccagagatt
actaaagaagaaataaaggaaaacctcaatgagttaaatgaagtaaaatttgctcattta
cattcacacagtcagttttctattctacaatctacggctagcgtaaaagatctagtagat
gcagcagcagcaaacgacatgcctgcagttgcgatgacagatcatgctaatatgatggga
gcatttcactttgttaaagctgtaaaagcatacaatgctagtctggtagatgctgaagat
ggatcacatcgcagccctataaaacctatcataggctgtgaatttcaggtttgtgaagat
atgcacgaccgcactcataaagataacggttatcaaatcgtcatattagccaaaaataaa
aatggctatcacaacctagccaagatggctagtaaagcctatacagagggtttttactac
atgccacgtattgataaaaagctggtagaagaatataaagaagatcttattgtactcact
ggtaacatgtatggtgaagtgccttctaaaattttaaatctaggagaaaaacaagccgaa
gaagcacttttgtggtggaaagaacattttggtgaagacttgtacattgagatcatgcgc
catggccaagaagatgaaaacagagccaatgaagtattgctccaatttgctcaaaaacat
gaggtgaaaattgttgctactaacaacacctattacatccataaagatgatgcaaacgcg
catgacattttactttgtgtaaaagataatgaaaagcaggctacacctataggtcgcggg
cgtggttatcgatacggtttacctaatcaagagtattattataagagcgacttggaaatg
aaagagctttttaaagatcttccagaagctatttttaatgtgcaagaagtagtcgataaa
atagaagcttatgaattggctagagatgtactcttacctgcctttgatataccagccgaa
tttgtagatgcaaatgacgcgatagaaaaaactaaaaatggagaaaataactatttaaga
caccttacttacgaaggagccaaaatacgttacggagaaatcactccagaaattaaagaa
cgattagaatttgaattagacacgatcgctagaactggttatcctggatatttcttaatt
acctgggattttattaaagcagcacgagaaatggatgttgccgtaggtcctggacgtgga
agtgctgctggaagtgtagtcgcttattgtttatggattaccaatgtagatcctattcac
tacgacttactttttgagcgtttcctaaatcctgatcgtgtatccatgcccgatattgat
attgattttgatgatgaaaatcgtcataaggtgatggattatgtaattgaaaaatatggt
gcttcacaagtggcacaaattatcacttatggaacgatggcagcaaagtcttctataagg
gatactgctcgtgcacttgatttaccattacaagatgccgatcgtgttgcaaagttgatt
cctgactttgctaaacttaaaaagatttttgctctagaggacaatgaaataggtagcaaa
tttagaggcgatgatgcagatatggtgcgagaactgcgaggactcgccgaaggaaatgac
cttactgctgaaacattaaagcaagcacgtattctagaaggatctgttagaaacactggt
gttcatgcttgtggtgtcattattacgccagatgacttgacaaattttgtgcctgttgct
acagcaaaaaattctgatctttacgtaactcaatttgataacgaagttgtagaaagcgca
ggtcttttaaaaatggacttcttagggttaaaaaccttaagtcagataaaagatacggtt
gctatcataaaagagcgccatggaatagagcttgacatagaatccattccgttagatgat
gagaaaacctacgaactcttccagcgtggagaaactacggctattttccagtatgaaagt
gttgggatgcaaaaatacatgagagagctcaaacctactcaatttgccgatcttatcgct
atgaacgctttgtatcgtcctggacctctagaatatattccagaatttattgatcgtaaa
catggtcgtaaagagatcgtttatgatctagacgccatggaggaataccttcaggagact
tatggtattacggtatatcaagagcaagtgatgttgctttctcaaaaactggctaacttc
tctaaaggtgatgcagatgttttgaggaaagccatgggtaaaaagcaaatggcgacgctg
caaaagatgaagcctcaatttctagatgctggagaaggaaacggtcatgatcgcacgatt
cttgaaaaagtatggaaagactgggaagcatttgcctcctatgcatttaataaatctcac
tcgacatgttatgcttggattgcttatcaaacagcttatctaaaagcaaactatggtgcc
gaatttatggcagctacgctttctaataacatgaatcagatcaaagatgttactaagttc
atggacgagtgccgccgcatgggactagacgtattagggcctgatgttaatgaatccaat
tataaatttaccgtaaatcctaaaggagccattcgttttgggatgggagctgtgaaaggt
ctaggtcatggtgcagtaatgactattattgataacagaaaagatggtccttacaagagt
atctttgatatggcaaagcgcatagacttgcgtgcagcaaataaaaagtcctttgaagca
ctggctttgagtggtggctttgacggtttaggaggagaaaatagagctcagttcttctat
gaatttgaaaacggacagatttttctggaacaagtagtgaaatacgcgcaaaaatttcaa
gagaatgaaaacagtgctcaagtaagtctttttggagaagctagtgacgtacaaatacca
gaacctcaattgccgatttgcgaagattggggaacgatggagaaattaaaaagagaaaaa
gaagtagttggaatctatatttcaggacatcctctggatgattataaaaaagagatcgag
tttttctgtaatgcaaatcttgcggctatgaaagacctcactcctttagtaaatagagaa
ttgactttttgtggtgttattacagaagcacgtcatatgatgagtaaggcaaacaagcct
tggggaatgtttactatggaggactatgaggaaacttatgagtttagaatgttcggtgaa
gactatttaaaattcagacactttttaattccgaatacttttttacatgccaaagtgaaa
attcagcaaggctggatcgataaaaatacgggcaaacctcgagatcctagaattctattt
actgccatgtcacaattacaagatgtgatgtcgcaagctgccaaaaaactgacgattgaa
ttacatgtaagcgaggttttagaagagcgcatagaattacttaaggagacactagataag
catcaaggagatcatcgtttgtattttaatctgaaggatcacgaagaaaaaatttcttta
gacatgtcagcaagacttcaaaaagtaaatgttaccgcagagttgttagaggttttagat
gaaaatgaaatcacctatggagttggttaa
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integrated database retrieval system
