Nonlabens dokdonensis: DDD_2567
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Entry
DDD_2567 CDS
T02441
Name
(GenBank) ATP-dependent RNA helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD_2567
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndo03019
]
DDD_2567
03009 Ribosome biogenesis [BR:
ndo03009
]
DDD_2567
Enzymes [BR:
ndo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
DDD_2567
Messenger RNA biogenesis [BR:
ndo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDD_2567
Ribosome biogenesis [BR:
ndo03009
]
Prokaryotic type
rRNA helicases
DDD_2567
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Helicase_RecD
Cas3-like_C_2
DUF5679
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AGC77694
UniProt:
L7WC70
LinkDB
All DBs
Position
2781200..2783167
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AA seq
655 aa
AA seq
DB search
MKNFEALGLTQPLLDGLAEMGFESPTEIQQQAIPILLKHDGDFIGLAQTGTGKTAAFGIP
LLELMDTSSKDTQALILAPTRELAQQICRQIEAMSQKMGKLNVVPVFGGASIMGQIKDIR
RGAQVIVATPGRLMDLMKRREVKLDALRFLILDEADEMLNMGFREDIDFILSKTDVGRNI
WLFSATMAREIKKIVDTYMKNPEEVRINREDIVNTNISHQYVQLKARDKTEALRRMLDFD
QDMFGVVFCRTKRDTQNVADELNNNGYSTEALHGDMSQAQRDAAMKRFRNKNLKLLIATD
VAARGIDVDDITHVIHFALPDDPEFYAHRSGRTARAGKKGESIALITKGDMRKLKFMEKK
LSISFDRGEIPALEAITQKRISRWTENLKGQEINPKISDELFEEVKASLEDVSKDELIGK
FLTKEYNSIYKRNSITDLNDRSKGREDSGEYRERKPRSRGREEGMKTYFINLGRKDDMNK
GALLGFVCDVTGIDGKDIGRIVLDGAHSFMDVKEEVAPQMEKINSAERNGRELRANVHDG
VVKESRDSRGGRDGGRGRSGGGYKGKRDGNSGGGYKGRRDSGPRSGGFKGRRRDDDSSSS
GGGFKGRSSRSNDDSGSGSSFKDRASRPKREDSGSSNKSSGKKGSRSKFFGSKWD
NT seq
1968 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaaattttgaagccttagggcttacacagccgttacttgacggccttgctgaaatg
ggatttgagagtccaacagagattcaacagcaagcaattcctatcttgctgaagcacgat
ggagattttataggtctggcgcagactggtacagggaaaactgcagcttttgggatacca
ttattagaactaatggacactagctcaaaagacacgcaggcattaattctagcccctacg
cgtgaactagcacaacaaatttgtcgtcagatagaagcgatgtctcaaaaaatgggtaaa
ctcaatgtggttcctgtttttggaggagcaagcatcatgggacaaattaaagatataaga
cgtggagctcaagttattgtagctactccaggacgtcttatggatcttatgaagcgtcgc
gaggtaaaactagacgcactaagatttcttattcttgacgaagcagatgaaatgttgaac
atgggtttccgtgaagacattgattttatactttctaaaacagatgtaggtcgtaatatc
tggttattctctgctaccatggcgagagaaatcaagaaaatcgttgacacttacatgaag
aaccctgaagaggttcgtatcaatcgcgaggatattgtaaatactaatatctcacaccag
tatgttcaattaaaagctcgagataaaactgaggctttaagaagaatgcttgattttgat
caagatatgttcggtgtggtgttttgtcgtaccaaaagagatactcaaaacgtcgcagat
gagttgaacaacaatggctattctactgaagcacttcatggagatatgtctcaagcacag
cgtgatgcagccatgaaacgttttagaaataaaaatttaaaacttttaatcgctacagat
gttgctgcaagaggtatagatgtagatgatattactcacgtaattcactttgcattacca
gatgatcctgagttttatgcgcaccgttctggacgtacagcgcgagctggtaaaaaagga
gaatctattgcgttgattacaaaaggtgacatgcgcaaattaaaatttatggagaagaaa
ctctctatatcttttgatcgaggagaaattccagcattagaagctattacgcaaaagcgt
atttctagatggacagaaaatctaaagggtcaagaaattaacccaaaaatttcggatgag
ctttttgaagaagtgaaagcaagtttagaagatgtttctaaagacgaattgataggtaaa
tttttaactaaagaatataattctatttataaacgtaactctatcacagatcttaatgat
cgttctaaaggacgcgaagatagtggtgagtatcgtgagagaaaacctagatctagaggt
cgtgaagaaggaatgaagacttacttcatcaatttaggccgtaaagatgatatgaacaaa
ggtgctttattaggttttgtttgtgatgttacaggcattgatggtaaagatataggacgt
atcgttttagatggagctcattcttttatggatgtaaaagaagaagtggcgcctcaaatg
gaaaagattaacagtgctgagcgtaatggtcgtgagctaagagcaaatgttcatgatggc
gttgtaaaagaatcaagagacagtcgcggtggacgtgatggtggtcgtggaagaagcggt
ggcggttacaaaggtaaacgtgatggtaattctggcggcggttacaaaggacgcagagat
tctggaccaagatctggcggattcaaaggaagacgaagagatgatgactccagctcttct
ggaggtggttttaaaggtcgcagctctagatctaatgacgattctggtagcggtagtagt
tttaaagaccgtgcgtccagaccaaaaagagaagactctggatcatctaataagtcttca
ggaaaaaaaggaagtcgttctaagttttttggttctaagtgggactaa
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