Nonlabens dokdonensis: DDD_2846
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Entry
DDD_2846 CDS
T02441
Name
(GenBank) ATP-dependent dead/H DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ndo
Nonlabens dokdonensis
Pathway
ndo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
DDD_2846
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndo03019
]
DDD_2846
03400 DNA repair and recombination proteins [BR:
ndo03400
]
DDD_2846
Enzymes [BR:
ndo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DDD_2846
Messenger RNA biogenesis [BR:
ndo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
DDD_2846
DNA repair and recombination proteins [BR:
ndo03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
DDD_2846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
HTH_11
HTH_7
HTH_Cmi2_C
TrmB
wHTH-PRTase_assc
Motif
Other DBs
NCBI-ProteinID:
AGC77973
UniProt:
L7WGC4
LinkDB
All DBs
Position
complement(3082197..3084083)
Genome browser
AA seq
628 aa
AA seq
DB search
MIENSLHILKNRFGYESFRPLQQEIIANVLEGKDSLALLPTGGGKSICYQIPGIQLNGIC
IVISPLVALIKDQIDQLKKRGIKAAGITGGISYRELDDILDNCIYGNYDFLYLSPERLKQ
DLVQERILKMNVNLIAVDEAHCISEWGHDFRPAYREINALRELHPRVPVIAVTATATKEV
QADIVTVLELEQPQVFKSSYERSNIHYQILHTADKRQALKEFYALHSGSSITYVRSRKNA
VEYSLLLQQQGITSGFYHGGLSNKLRSKTSTAWLKNETQVIVATNAFGMGIDKPDVRSIV
HLQLPDSIESYYQETGRAGRDGTLSTAQFIYNRNDIQHAYNQFVKSQPTVDYLKFIYRKL
SNFLRIALGEGENLTQPLSFSQFCKTYELNGMQAYSALNALDRFSVIHLAQGFHRRCSIR
FRESGTNIINFVRNRPEVNAIIQSILRTYGSSKNQTLQINPSLIATRSNTNEDLVFETIE
LLKNQDFIDATIAHTDLQITYLTPRDDDRTINRFSKELEKQNQIRLAKLKSVIQLVTNTE
DCINRMILTYFDEELKENCNHCSNCVTKQKGENVQNEVLALIQKKPVSAQEILSRSKLAR
ETVIKAIKELLENKTIILTDNNKYTLHE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
ttgatcgagaattcgttacatatactcaaaaatcggttcggttatgaatcttttagacct
ttacagcaagaaataatagcaaacgttctagaaggaaaagattcacttgctttattgcct
accggtggaggaaaatctatatgttatcaaataccaggtattcaactaaacggaatttgt
atcgtcatctcgcctttagtagcacttataaaagatcaaatcgatcaacttaagaaaaga
ggtatcaaagctgctggtattaccggtggaatttcttacagagaactcgatgacattctt
gacaattgtatttatggaaattatgattttttatacctcagtccagaacgactgaaacaa
gaccttgttcaagaacgtatacttaaaatgaacgtcaacctcattgctgtagatgaggca
cattgcatcagtgaatggggacacgactttagaccagcttatcgtgagattaatgctttg
agagaattgcatcctcgagtaccggtaattgcggtgacagccacagcaacaaaagaagtt
caagcagatattgttactgtgttagagctggaacaaccacaagtttttaagtccagttat
gaaagatcaaatattcattatcagattcttcatactgcagataagcgacaagcactcaaa
gagttttatgcgctacattctggctccagcataacttatgtacgaagtagaaaaaacgct
gtggaatacagtttactcttacaacaacaaggtattacttctggattctatcatggtggt
ctttctaataaattgcgctcaaaaacctctactgcatggctcaaaaatgaaactcaagtc
atcgtggctacaaatgccttcgggatgggaatcgataagccagacgtgcgcagtattgtt
cacttgcagctgcctgatagtatagaaagctattatcaagaaactggaagagctggccgt
gatggcacgcttagcacagctcaattcatttataatcgcaacgacatccagcatgcctat
aatcaatttgtaaaatcacaacctactgttgattatctcaaatttatttatagaaagtta
tctaattttctgagaatcgctttgggcgaaggcgagaacttaacacagcccttatccttt
tctcaattctgtaaaacttatgagctcaatggaatgcaggcatacagcgccttaaatgcc
ttagaccgctttagtgtcatccatcttgcacaaggtttccatagacgttgtagtatccgc
tttcgcgaaagcggaacaaacatcataaactttgtaagaaaccgtcctgaagttaatgcc
atcattcaatctatattaaggacttacggaagtagtaaaaaccaaacattacaaattaat
ccatcacttattgctacgagaagtaatactaatgaggacttagtgtttgaaactatagag
cttttgaaaaaccaagattttatagacgcgaccattgctcataccgatttacaaattact
tatttaacgcctagggatgatgaccgcaccattaataggttttcaaaagaattagaaaag
caaaatcaaatacggctggcaaaattaaaatctgtgatacaattagtgactaatactgaa
gactgtatcaatagaatgattttaacttattttgatgaagaacttaaagaaaattgcaat
cattgcagtaattgcgtgactaagcaaaaaggtgaaaatgtacaaaatgaagttttggca
ttgattcaaaaaaagccagtgagtgctcaagaaattttgagccgcagcaaattagctcgt
gaaacggtcataaaagcaattaaagaactattagaaaacaaaactattatcctaaccgat
aataataaatacaccttacatgaataa
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