Nocardioides daphniae: E2C04_05540
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Entry
E2C04_05540 CDS
T05939
Symbol
mrdA
Name
(GenBank) penicillin-binding protein 2
KO
K05515
penicillin-binding protein 2 [EC:
3.4.16.4
]
Organism
ndp
Nocardioides daphniae
Pathway
ndp00550
Peptidoglycan biosynthesis
ndp01100
Metabolic pathways
ndp01501
beta-Lactam resistance
Brite
KEGG Orthology (KO) [BR:
ndp00001
]
09100 Metabolism
09107 Glycan biosynthesis and metabolism
00550 Peptidoglycan biosynthesis
E2C04_05540 (mrdA)
09160 Human Diseases
09175 Drug resistance: antimicrobial
01501 beta-Lactam resistance
E2C04_05540 (mrdA)
09180 Brite Hierarchies
09181 Protein families: metabolism
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ndp01011
]
E2C04_05540 (mrdA)
Enzymes [BR:
ndp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.16 Serine-type carboxypeptidases
3.4.16.4 serine-type D-Ala-D-Ala carboxypeptidase
E2C04_05540 (mrdA)
Peptidoglycan biosynthesis and degradation proteins [BR:
ndp01011
]
Peptidoglycan biosynthesis and degradation
DD-Transpeptidase (Class B PBP)
E2C04_05540 (mrdA)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Transpeptidase
PBP_dimer
MreD
Motif
Other DBs
NCBI-ProteinID:
QCC76811
UniProt:
A0A4P7UBA1
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All DBs
Position
1115522..1118239
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AA seq
905 aa
AA seq
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MSLVRGLVGLLLVVVALGLQTSLFPHLAWNGVVPNLVLLVVVAAALSRSPQFALVLGFTG
GVLMDLVGPADHFAGRWALALVVVAWVAARVRQDTRPGTLAVLGTVAASSFIGTSVFALT
GLVLRDPVVGVGEMLGVIGRRPVGPAADPDRAAAGHEGPASWRARRRGAGRGLMAVTGAE
RSRLRLLVLRALVLTLFLTLFARLYYLQVVGGDDYRAKAADQSVRDIVVQPQRGLVVDDM
GRPLVANRLSWVVSIDRSVLRKLEEDERDKLVARVATAVDQRPAKVERRLLDCGSSGAES
GVCWNGSPFQAVPVATDVDQAVALRILEQPEDYPGVVVEQQNVRSYPSPFGVNLAHVLGY
LSPITEEEFDSASEADDRSLNGASVVGRAGVERQYDEWLRGMPGYRRVSVDSMGRVLGDD
SEIASTPGDTLVTSIDAKVQATVEKELARSIATQRATVDKVTGRKFAADSGAAVVLEAKT
GRVVAMASQPTYDPEVWVDGITDKELARLYSEKAGTPLLSRVTQGQFAPGSTWKPFMTAA
ALRNGYSADTRLPCGASYQVGNRPFKNFESGTYGTIGFAKALEVSCNTFFYAIGHNYWKK
FGSDVDDVDARDPLVEGAQEWGFGSETGIDLPGEASGRIADRAWKRAYYDSQKSYYCGIA
KKPQTADTSAFLYKFAREFCVEGYAYRAGDAVNFSIGQGDTMVTPLQLAVGYAALSNGGT
LWQPRVGKAIVTPEGEVIQQIKPKKAGKVKSTKAQLAFIDDALKGVASVGTMSWKLGGFP
LDQVPIRAKTGSAEVYGKQSTGWVASYTKDYVVIMMISQGGTGSGSTGDSVRKIWETLYG
VEGDRVVPRRAAIPGTTAPTELPTFAEDGSILPPVGPMTDNPKKKAGKKAGAKAGQGAGT
AGGAQ
NT seq
2718 nt
NT seq
+upstream
nt +downstream
nt
atgagcctcgtacgcggcctcgtcggcctgctcctcgtcgtggtggccctcgggctccag
acctccctcttcccgcacctggcatggaacggcgtcgtgcccaacctggtgctgctcgtc
gtggtcgccgcggccctctcccgcagcccgcagttcgcgctggtgctgggcttcaccggc
ggcgtgctgatggacctggtcggcccggccgaccacttcgccggccggtgggcgctcgcc
ttggtcgtcgtggcctgggtggcggcgcgcgtgcgccaggacacccgccccggcacgctc
gccgtgctgggcacggtcgccgcctcctccttcatcggcacctcggtcttcgcgctgacc
ggcctggtcctgcgtgacccggtggtcggcgtgggcgagatgctcggcgtgatcggtcgc
cgtcctgtgggacctgctgctgaccccgatcgtgctgccgctggccatgaaggtcctgcg
tcgtggcgcgcccgccggcgcggagcgggtcggggtctgatggcggtcaccggggctgag
cggagccggctgcgcctgctggtgctgcgcgccctcgtgctcacgctcttcctcaccctc
ttcgcccgcctctactacctccaggtcgtcggcggcgacgactaccgcgccaaggcggcc
gaccagtcggtgcgcgacatcgtcgtgcagccgcaacgcggactggtcgtcgacgacatg
ggccgtcccctggtcgccaaccggctgagctgggtcgtctcgatcgaccgctccgtgctg
cgcaagctggaggaggacgagcgcgacaagctcgtggcccgggtcgccactgcggtcgac
cagcgaccggccaaggtcgagcggcgactcctcgactgcggctcgagcggcgccgagtcg
ggtgtctgctggaacggctcgcccttccaggccgtcccggtggccaccgacgtcgaccag
gcggtcgcgctgcgcatcctcgagcagcccgaggactacccgggcgtcgtcgtcgagcag
cagaacgtgcgctcctacccctcgcccttcggcgtcaacctggcccacgtgctcggctac
ctcagcccgatcaccgaggaggagttcgactcggcctccgaggcggacgaccgctcgctc
aacggtgcctcggtcgtcggccgtgccggcgtggagcggcagtacgacgagtggttgcgc
ggcatgcccggctaccggcgcgtctcggtcgactcgatgggccgcgtcctgggcgacgac
agcgagatcgccagcacgccgggcgacacgctggtcacctccatcgacgccaaggtgcag
gcgacggtcgagaaggagctggcccgctcgatcgccacccagcgcgccaccgtcgacaag
gtcacgggccgcaagttcgcggccgactccggcgccgcggtggtgctggaggcgaagacc
ggacgggtggtcgcgatggccagccagccgacgtacgaccccgaggtctgggtcgacggc
atcaccgacaaggagctggcgcgcctctactccgagaaggccggcaccccgctgctctcg
cgggtcacccagggccagttcgcgccgggctcgacctggaagcccttcatgaccgcggcg
gcgctgcgcaacggctacagcgccgacacccgcctcccgtgcggggccagctaccaagtg
ggcaaccgccccttcaagaacttcgagtcgggcacctacggcaccatcggcttcgccaag
gcgctcgaggtctcctgcaacaccttcttctacgcgatcgggcacaactactggaagaag
ttcggctccgacgtcgacgacgtagacgcgcgtgacccgctggtggagggcgcccaggag
tggggcttcggctccgagacgggcatcgacctgccgggcgaggcgtcgggccggatcgcc
gaccgggcgtggaagcgtgcctactacgactcgcagaagagctactactgcggcatcgcc
aaaaagccgcagacggccgacacctcggcgttcctgtacaagttcgcgcgtgagttctgc
gtcgagggctacgcctaccgcgccggcgacgccgtcaacttctccatcgggcagggcgac
accatggtgacgccgctccagctcgccgtcggctacgccgccctctccaacggcggcacg
ctgtggcagccccgggtgggcaaggcgatcgtgacgcccgagggcgaggtcatccagcag
atcaagccgaagaaggccggcaaggtgaagtcgaccaaggcccagctcgccttcatcgac
gacgcgctcaagggcgtcgccagcgtcggcacgatgagctggaagctcggcggcttcccg
ctcgaccaggtcccgatccgcgccaagaccggctccgccgaggtctacggcaagcagtcg
accgggtgggtggccagctacaccaaggactacgtcgtcatcatgatgatcagccagggc
ggcaccggctcgggctccaccggtgactcggtgcgcaagatctgggagaccctgtacggc
gtcgagggcgaccgcgtcgtcccgcgccgcgccgcgatccccggcaccacggcccccacc
gagctcccgaccttcgcggaggacggctcgatcctgccgcccgtcggcccgatgaccgac
aaccccaagaagaaggcgggcaagaaggccggcgcgaaggccggccagggtgccggcact
gcgggaggggcgcagtga
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