Nocardioides daphniae: E2C04_11125
Help
Entry
E2C04_11125 CDS
T05939
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ndp
Nocardioides daphniae
Brite
KEGG Orthology (KO) [BR:
ndp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndp03019
]
E2C04_11125 (hrpB)
Enzymes [BR:
ndp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
E2C04_11125 (hrpB)
Messenger RNA biogenesis [BR:
ndp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
E2C04_11125 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
AAA_22
HA2_N
AAA_19
CON_HrpB
AAA_30
ResIII
AAA_11
AAA_16
ParA
nSTAND3
RoxA-like_Cyt-c
AAA
Cas3-like_C_2
Helicase_RecD
DUF6380
Motif
Other DBs
NCBI-ProteinID:
QCC78744
UniProt:
A0A4P7UFX2
LinkDB
All DBs
Position
complement(2277383..2279938)
Genome browser
AA seq
851 aa
AA seq
DB search
MPGVRQTSGVSDPLRRLLAAPPDLPVTAALTELGEALRTHAVAVVHAPPGTGKTTLVPPA
VAEAVEGRVVVTQPSRIAARAAARRLAQLLGEPVGETVGYSVRGERRTSRRTRIEVVTTG
LLLRRLQQDPELAGVGAVVLDEVHERHLDADLTLALLVDIRTNLRDDLRLVAMSATIEAE
RTAALLASDGAVPPLASVPVISVPGALHPVETLWCPLPAGQRRTDDRGITPAFHDHVAAT
VRRALAEHEGDVLVFVPGVAEVEATVRRLAGVEADVHALHGRLPGAEQDRALTEGPRRRV
VVSTAVAESSLTVPGVRIVVDAGFSREPRTDHRRGLASLVTVAVSRASAEQRAGRAGRLG
PGVVLRCWSEAEHAHLAAHPEPEVATADLTAFALQVACWGSDDVGDLALLDQPPTHALAA
AREVLRDLGAIDDDGRVTARGRMIAGVPTDPRLARALIDGAQLVGTRRAAEVVAMLSEDV
RAPGGDLVAALRSLRAGHRSGAWRSQVTRLGAVAPQHDARGPLTDDVAVGLVVALAHPDR
IARKRPGASSYLMTSGTGAAFDVRDPGPLAGLEWLAVADADRRPGQREARIRGAAPLTED
LALEAAGSQWTEVDEVTWTEGRVRARRRTLLGAIELASVPLSDPPTDAVTGAIREALRRE
GIGLLSWSEAATTLRVRLDFLHRVLGEPWPDVSDEALTEHLDAWLGPQLARVRSVEHLRR
IDVTAALRALLPWPEAGRLDELAPERVEVPSGSSVRIDYTAEQPVLAVRLQEVFGWTAVP
ALAGGKVPLLLHLLSPARRPAAVTADLDSFWDNGYPGVRADLRGRYPKHAWPDDPRSAQA
TRRTNAAARPR
NT seq
2556 nt
NT seq
+upstream
nt +downstream
nt
gtgccgggtgtcaggcagacttcaggggtgtccgacccgttgcgccgcctgctcgccgcg
ccgcccgacctcccggtcaccgcggcgctgactgagctcggtgaggcgctgcgtacgcac
gcagtggcggtggtccacgcaccgcccggcaccggcaagacgaccctcgtcccgccggcg
gtcgccgaggcggtcgagggccgggtggtcgtcacgcagcccagccggatagcggcgcgt
gctgccgcccgccggttggcgcagctgctgggagagccggtgggggagacggtcggctac
tccgtgcgcggcgaacggcgcaccagcaggcgtacgcgcatcgaggttgtcacgaccggt
ctgctgctccgccgcctccagcaggaccccgagctcgcgggcgtgggcgccgtcgtgctc
gatgaggtgcacgagcggcacctcgacgcggacctgaccttggcgctgctcgtcgacatc
cgcaccaacctgcgcgacgacctgcggctggtggcgatgtcggccacgatcgaggccgag
cgcacagccgcgctgctcgccagcgacggggccgtgcccccgctggccagcgtccccgtg
attagcgtcccgggcgccctgcaccccgtcgagacgctctggtgcccgctgccggcgggg
cagcggcgtacggacgaccgagggatcacgccggccttccacgaccacgtcgccgcgacc
gtacgccgggctctggccgagcacgagggtgacgtcctggtcttcgtgccgggcgtcgcg
gaggttgaggcgaccgtacgccgcctggccggggtggaggccgacgtccatgccctgcac
ggacgcctgcccggagccgagcaggaccgtgcgctcaccgagggcccgcggcgccgcgtc
gtcgtctccaccgcggtcgcggagtcgtcgctgaccgtgcccggcgtccgcatcgtcgtg
gacgccggcttctcccgcgagccgcggaccgaccaccgccgtgggctcgcctcgctggtc
acggtcgcggtgagtcgggcatcggccgagcagcgcgccggacgcgccggacggctcggc
ccgggcgtcgtcctgcgctgctggtcggaggccgagcacgcgcacctggccgcccacccc
gagcccgaggtcgccaccgccgacctcaccgcgttcgccctgcaggtggcctgctggggg
agtgacgacgtgggcgacctggcgctgctcgaccagccgccgacgcacgctctggcggca
gcccgtgaggtgctccgcgacctgggcgcgatcgacgacgacggccgcgtcactgctcgc
ggacggatgatcgcaggcgtgccgaccgacccgcggctcgcacgggccctgatcgacggg
gcgcagctggtcgggaccaggcgtgctgccgaggtggtcgcgatgctgagcgaggacgta
cgtgcgcccggaggggacctcgtggcggccctgcggtcgctgcgggcggggcaccgctcc
ggcgcgtggcgcagccaggtcacccgcctgggggccgtggccccgcagcatgacgcccgg
gggccgctcaccgacgacgtggccgtcgggctggtcgtggccctggcccacccggaccgg
atcgcccgcaagcgccccggcgcgtcgagctacctgatgacgtcggggacgggcgcggcc
ttcgacgtgcgtgatcccggcccgcttgccgggctggagtggctcgcggtcgccgacgcc
gaccgcaggcccgggcagcgcgaggcccggatccgcggcgccgcgccgctcaccgaggac
ctggcgctggaggcggcgggctcgcagtggaccgaggtcgacgaggtgacctggaccgag
gggagggtgagggcccgacgtcgtacgctgctgggcgcgatcgagctcgcctcggtgccg
ctcagtgacccgccgacggacgccgtgacgggcgcgatccgtgaggcgctgaggcgtgag
gggatcggcctgctctcctggtcggaggcggccacgaccctgcgcgtccgcctcgacttc
ttgcaccgcgtgctcggcgagccgtggccggacgtgagcgacgaggccctcaccgagcac
ctcgacgcctggctggggccgcagttggcgcgggtccgctcggtcgagcacctgcgccgg
atcgacgtcaccgctgcgctgcgggcgctgctgccgtggcccgaggcggggcggctcgac
gagctggctcccgaacgggtcgaggtgcccagcgggtcgagcgtgcggatcgactacacc
gccgagcagccggtgctggccgtgcggttgcaggaggtcttcggctggacggccgtcccg
gcgctagcgggcgggaaggtgccgttgttgctgcacctgctctcgcccgcccgccgtccg
gccgcggtcacggccgacctggactccttctgggacaacggctacccgggcgtgcgcgct
gacctgcgggggcgctaccccaagcacgcgtggcccgacgacccgcgctcggcgcaggcc
acgcggcgtacgaacgccgccgctcgccctcggtga
DBGET
integrated database retrieval system
