Nocardioides daphniae: E2C04_14880
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Entry
E2C04_14880 CDS
T05939
Name
(GenBank) FliA/WhiG family RNA polymerase sigma factor
KO
K02405
RNA polymerase sigma factor FliA
Organism
ndp
Nocardioides daphniae
Pathway
ndp02020
Two-component system
ndp02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ndp00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
E2C04_14880
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
E2C04_14880
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndp03021
]
E2C04_14880
09183 Protein families: signaling and cellular processes
02035 Bacterial motility proteins [BR:
ndp02035
]
E2C04_14880
Transcription machinery [BR:
ndp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
E2C04_14880
Bacterial motility proteins [BR:
ndp02035
]
Flagellar system
Flagellar assembly proteins
Stator
E2C04_14880
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
NirdL-like_HTH
HTH_AsnC-type
HTH_23
HTH_Tnp_ISL3
KORA
HTH_24
HTH_28
HTH_5
DUF937
Motif
Other DBs
NCBI-ProteinID:
QCC78148
UniProt:
A0A4P7UFU8
LinkDB
All DBs
Position
3026201..3027040
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AA seq
279 aa
AA seq
DB search
MTSETSTSPQRHELITATMPLVGHIVREMAGRVPNHVSRDDLTSAGLVALVRAADSFEDE
RGVPFARYAATRIRGALIDELRSVDWASRSVRRRARDLEETRHQLAVALGRVPSNAEVAS
ATGMSLDEVIANDDDVARAQVLSLQGAPEDALDELVPADTATPEQLALHRERLTYMVEAV
AELPERLRIVVTEYFLAERPMTEIAEQLGVSESRVSQIRAEALSLLREALNRELDPHLVA
APSRPEGCAARRRESYFAAVATRHAAALRPARVGVEARA
NT seq
840 nt
NT seq
+upstream
nt +downstream
nt
gtgacctcggaaaccagcacgtccccccagcgtcatgagctgatcaccgccaccatgcca
ctggtggggcacatcgtccgcgaaatggccgggcgggtgcccaaccacgtgtcgcgggac
gacctcacctcggccggcctggtcgccctcgtgcgcgccgccgactccttcgaggacgag
cgcggggtgccgttcgcccgctacgccgccacccggatccgtggcgccctcatcgacgag
ctccgcagcgtcgactgggcctcgcgctccgtgcgccgccgtgcccgcgacctggaggag
acccgccaccagctggccgtcgccctcggccgggtcccgagcaacgccgaggtcgccagc
gccaccggcatgagcctcgacgaggtcatcgccaacgacgacgacgtcgcccgggcccag
gtgctctccctgcagggcgcccccgaggacgcgctcgacgagctggtccccgccgacacc
gccacccccgagcagctggcgctgcaccgtgagcgcctcacctacatggtggaggcggtc
gccgagctgcccgagcgcctccgcatcgtcgtcaccgagtacttcctggccgagcggccg
atgaccgagatcgccgagcagctcggcgtgagcgagtcccgggtctcccagatccgcgcc
gaggcgctgagcctcctgcgcgaggcgctcaaccgtgagctggacccccacctggtcgcc
gcgcccagccgccccgagggctgtgccgcccgacgtcgcgagtcctacttcgcggccgtc
gcgacccggcacgccgccgccctgcgccctgcccgcgtgggcgtcgaggcgcgcgcctga
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