Novosphingobium decolorationis: HT578_00730
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Entry
HT578_00730 CDS
T07993
Name
(GenBank) pyridoxal-dependent decarboxylase, exosortase A system-associated
KO
K01586
diaminopimelate decarboxylase [EC:
4.1.1.20
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr00300
Lysine biosynthesis
ndr00470
D-Amino acid metabolism
ndr01100
Metabolic pathways
ndr01110
Biosynthesis of secondary metabolites
ndr01120
Microbial metabolism in diverse environments
ndr01230
Biosynthesis of amino acids
Module
ndr_M00016
Lysine biosynthesis, succinyl-DAP pathway, aspartate => lysine
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09100 Metabolism
09105 Amino acid metabolism
00300 Lysine biosynthesis
HT578_00730
09106 Metabolism of other amino acids
00470 D-Amino acid metabolism
HT578_00730
Enzymes [BR:
ndr01000
]
4. Lyases
4.1 Carbon-carbon lyases
4.1.1 Carboxy-lyases
4.1.1.20 diaminopimelate decarboxylase
HT578_00730
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Orn_Arg_deC_N
Orn_DAP_Arg_deC
Ala_racemase_N
Motif
Other DBs
NCBI-ProteinID:
QVM82420
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All DBs
Position
140462..141688
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AA seq
408 aa
AA seq
DB search
MKPLGPIPAGFEAIDGVLVVAGRPVTHWVEEVGDTPLFLYSAERIRARIAQLRAAMPARL
ALHYAVKANPFGPVLSLMHGLVDGFDIASGGELRELLACGVAGGEISFAGPGKRDRELEA
AIVHGVTLNLESEGEATRALALGQKLGLRPRLAVRVNPDFDLKGSGMKMGGGAKPFGIDA
ERVPALVRRLLDADADWRGFHIFAGSQALDASAIAETQGQTLDLAARLAQEVGKAPPHCN
LGGGLGIPYFGPDTPVDLEAVGGALAQRFERLPEILQDTRFCMELGRYLVGEAGVYLTRV
LDRKTSHGETFLVTDGGLHHQLAASGNFGTVVRRNYPVAIATRLGAPVEEEVSIVGCLCT
PLDKLAEKAGFPRADVGDLVAVFCAGAYGASASPASFLGQGPALERLV
NT seq
1227 nt
NT seq
+upstream
nt +downstream
nt
atgaagccgctcggtcccattcccgcagggttcgaggccatcgacggtgtccttgtcgtc
gctggaaggcccgtgacgcattgggtcgaggaggtgggggatacgccgcttttcctctac
agcgcagagcgtatccgcgcgcgtatcgcccagctgcgcgcggccatgcccgcgcgcctc
gcgctgcactacgcggtgaaggccaatcctttcggtcctgtgctttcgctgatgcacggg
ctggtcgatggcttcgacatcgcctcgggcggcgaactgcgcgaactgcttgcctgcggc
gttgcgggcggggagatcagcttcgccgggcccggcaagcgtgaccgcgagctggaagcg
gccattgtccacggtgtcacgctcaacctggagtccgagggcgaagcaacccgcgcgctc
gcccttggccagaagctgggcctgcgtccgcgtctggccgtgcgcgtcaatccggacttc
gacctcaagggctcaggcatgaagatgggcggcggcgccaagcccttcggcatcgatgcg
gagcgggttccggcgctggtgcgccgcctgctggacgccgatgcggactggcgcggattc
cacatattcgcgggcagccaggcgctggatgccagtgcgattgccgaaacgcaggggcag
acgctcgatctcgccgcgcggctggcccaggaggtgggcaaagcgcccccccactgcaat
ctgggcggcggacttggcatcccctatttcggtccggacactccggtggacctggaggct
gtcggcggcgcgctggcgcagcgtttcgagcggctcccggagatcctgcaggacacgcgc
ttctgcatggagcttggccgctacctggtgggggaggccggggtctatctcacccgggtg
ctcgaccgaaaaacgagccatggtgaaacttttcttgtgaccgatggcgggttgcaccac
cagttggctgcctcgggcaacttcgggacggtggtgcggcgcaactacccggtcgccatt
gccacgcgcttgggcgcgccggtcgaggaggaggtctcgatcgtcgggtgcctgtgcacg
ccgctcgacaagctcgcggaaaaggccggtttcccgcgcgcggacgtcggcgatctcgtc
gcggtgttctgcgcgggcgcctatggtgcaagcgcgagcccggcctcgttcctggggcag
gggcctgccttggagcggcttgtctga
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