Novosphingobium decolorationis: HT578_00960
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Entry
HT578_00960 CDS
T07993
Symbol
recJ
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03410
Base excision repair
ndr03430
Mismatch repair
ndr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
HT578_00960 (recJ)
03430 Mismatch repair
HT578_00960 (recJ)
03440 Homologous recombination
HT578_00960 (recJ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_00960 (recJ)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
HT578_00960 (recJ)
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
HT578_00960 (recJ)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HT578_00960 (recJ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
DHHA1
RecJ_OB
Toprim_3
Motif
Other DBs
NCBI-ProteinID:
QVM82457
LinkDB
All DBs
Position
complement(198082..199878)
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AA seq
598 aa
AA seq
DB search
MASRPSTVFGIERSLTGKSWLWRGGNMDISQGFGSPGGLEDDIVTQLLLSRGVDRSDLDR
HRNPSLRAFLPDPSEFQDMDVAASRLADAVQKREAITVYGDYDVDGATSAALLILLLRRL
GIEARYYIPDRLLEGYGPSGEALVRLGKEGSDLVVTVDCGAMAHEALAMAKDAGLDVVVV
DHHKCSPELPRTVALVNPNRLDESDLAASHGNLAAVGVAFLLAIATVRTLRARGYFQERR
EPDLFALLDLVALGTVADVASLHGLNRALVAQGLKVMARREHIGMSALIDASRLSRAPTC
SDLGFALGPRINAGGRVGESTLGVRLLTTTDPHEAEQIAAQLSHLNDERRAIEQAVQEAA
EEQLARQDNRSVLVLAGAGWHPGVIGIVAGRIKEKTGKPALVIALEADEAGNGKGSGRSI
AGVDLGAAIIAAREAGLLVAGGGHAMACGLTIAPDKLEALSDWLDDRLAGDVARASASQS
IRLDLALSPGGLTPDLVETLDGAGPYGMGWPGPRVAVGPVRVFKADVVGKDHVRLIVGGQ
DGGRFKAMAFRAAETDMGQALLHGSEGRRLWLAGRTKIDDWGPRPQAELHIEDAAFAD
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atggcttcgcgaccttcaaccgttttcggcatcgagcgctccctcaccggcaagtcctgg
ctctggcgtgggggaaacatggacatctcgcaagggttcggaagccccggtgggctggag
gacgacatcgtcacccagctcctcctctcgcgcggagtcgatcgcagcgacctcgaccgc
catcgcaatccttcgctgcgcgcattcctgcccgacccctccgagttccaggacatggac
gtggccgcttcgcgcctggccgatgcggtccagaagcgcgaggcgatcaccgtctacggt
gactacgacgtcgatggcgcaaccagcgcggcgctgctgatcctgctgctgcgccgcctg
ggtatcgaggcgcgctactacatccccgaccgcctgctcgaaggctacggcccttcgggt
gaggcgctggtgcgcctgggcaaggagggctccgatctcgtcgtcactgtcgactgcggc
gcgatggcccacgaggcgctggcgatggcgaaggacgccgggctcgacgtcgtcgtggtc
gaccaccacaagtgctcgcccgagcttcccagaacggtcgcgctggtcaatcccaaccgc
ctcgacgaaagcgaccttgccgcctcacacggcaatcttgcggccgtgggcgttgccttc
ctcctggccattgccaccgtgcgcacattgcgtgcgcgcggctacttccaggagaggcgc
gagcccgatctcttcgccctgctcgatctcgtcgcgctgggcacggtggcggatgtcgcc
tcgcttcacggcctcaaccgcgcgcttgtcgcccaagggctcaaggtcatggcgaggcgc
gagcatatcggcatgtccgcgctgatcgatgcgagccgcctcagccgcgcgcccacctgc
tcggacctcggctttgcactggggccgcgcatcaacgccggcgggcgcgtgggcgaatcg
acgctgggcgtgcgccttctcaccaccaccgacccgcacgaggccgagcagatcgccgcc
cagctctcgcacctcaacgacgagcgccgcgcgatcgagcaggccgtgcaggaagcggcc
gaggaacagctggcccgccaggacaaccgctcggttctcgtcctcgccggcgcaggctgg
caccccggcgtcatcggcatcgtcgccgggcgcatcaaggagaagaccggaaagcctgcc
cttgtcatcgcgcttgaggctgacgaagcgggcaacggcaagggatcgggccgctcgatc
gcgggcgtggacctgggcgcggcgatcatcgccgcgcgcgaggccggtctgctggtggcg
ggcggcggccacgcgatggcctgcggcctgaccattgcgccggacaagctggaggccctg
tccgactggctcgacgaccggttggccggagacgtcgcccgcgccagcgccagccagtcg
attcgcctcgacctggcgctctcaccgggcgggcttacgcccgatcttgtcgaaacgctc
gacggcgcaggcccttacggcatgggttggccgggcccgcgcgtggccgtggggcccgtg
cgcgtgttcaaggcggacgttgtcggcaaggaccatgtgcgcctgatcgtgggcggtcag
gatggtgggcgcttcaaggccatggccttccgcgcggccgagacggacatgggccaggcc
ctcctccacggcagcgagggacgccgtctgtggctcgccggacggaccaagatcgacgat
tggggcccccgtccccaggccgaactccacatcgaagacgccgcctttgccgactga
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