Novosphingobium decolorationis: HT578_02220
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Entry
HT578_02220 CDS
T07993
Symbol
hfq
Name
(GenBank) RNA chaperone Hfq
KO
K03666
host factor-I protein
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr02024
Quorum sensing
ndr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HT578_02220 (hfq)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
HT578_02220 (hfq)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndr03019
]
HT578_02220 (hfq)
03036 Chromosome and associated proteins [BR:
ndr03036
]
HT578_02220 (hfq)
Messenger RNA biogenesis [BR:
ndr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
HT578_02220 (hfq)
Chromosome and associated proteins [BR:
ndr03036
]
Prokaryotic type
Nucleoid associated proteins
Other nucleoid associated proteins
HT578_02220 (hfq)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hfq
Hfq_1
Motif
Other DBs
NCBI-ProteinID:
QVM82673
UniProt:
A0ABX8E163
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All DBs
Position
complement(476012..476587)
Genome browser
AA seq
191 aa
AA seq
DB search
MAGRTLSARPRASATTEPADTKPAAAPAQSAPASGKGQNLQDQFLNLLRKNKTPVTMFLV
KGVKLQGIVTWFDNFSILLRRDGQSQLVYKHAISTIMPSTPVDAAQFNSGEGSKKTRALQ
DVFLSSIRSAGVQVTMFLINGVMLQGRVAAYDLFCMLLEREGYVQLAYKHAVSTIQPVTP
VDLQSHEEAED
NT seq
576 nt
NT seq
+upstream
nt +downstream
nt
atggctggtcgaacgctttccgcgcggccgagagcgagcgccaccacggagcctgcggac
accaagcccgcggcagctccggcgcaatcggcacctgcatccggtaagggccagaacctt
caggatcagttcctcaacctcctgcgcaagaacaagacccccgtgaccatgttcctggtc
aagggcgtcaagctgcagggcatcgtcacctggttcgacaacttctcgatcctgctgcgc
cgcgatgggcagtcgcagctggtctacaagcacgccatttcgacgatcatgccctcgacg
cccgtcgatgcggcccagttcaacagcggcgagggttccaagaagacccgcgcgcttcag
gacgtcttcctctccagcatccgcagcgccggcgtgcaggtgactatgttcctgatcaac
ggcgtcatgctccagggccgggtcgcggcctatgacctgttctgcatgctgctcgaacgc
gaaggctatgtgcagcttgcctacaagcatgcggtctcgacgatccagccggtgaccccg
gtggacctgcagagccacgaagaagcggaagactga
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