Novosphingobium decolorationis: HT578_04180
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Entry
HT578_04180 CDS
T07993
Symbol
addA
Name
(GenBank) double-strand break repair helicase AddA
KO
K16898
ATP-dependent helicase/nuclease subunit A [EC:
5.6.2.4
3.1.-.-]
Organism
ndr
Novosphingobium decolorationis
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_04180 (addA)
Enzymes [BR:
ndr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HT578_04180 (addA)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
AddAB pathway proteins
HT578_04180 (addA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
PDDEXK_1
UvrD_C
UvrD_C_2
AAA_19
DUF6074
Motif
Other DBs
NCBI-ProteinID:
QVM83014
LinkDB
All DBs
Position
complement(909592..913092)
Genome browser
AA seq
1166 aa
AA seq
DB search
MSGPAKVYPLHGNQMPAVNPLDTVWLSASAGTGKTQVLSSRVLRLLLQPGISPSQILCLT
FTKAGATEMAARINGTLAEWVRMEDVELFPRLEAIGAPTDGATMARARTLFAAVLDCPGG
GLRIDTIHAFSQWLLATFPLEADLIPGSRPMEDRERTLLAKQVLADLLVEAEEDPLGDPQ
LLDAISALSLRHGPDAVVGFLLRCAGAREVWFGPGSWQAGDMRAHVLRLLDLPPQADADM
LAELCSDARFDVASLRRCMEVNHEWNTKTGLEAVDRISEWLLGNPTQRAASIDEMAKAFL
TQKGEPKASKSQDKIEPSYPDYAARVVAGIEGVRTLRAMLDLVDHLVPSLRLGRAFAIAW
DEAKSREGLIDFDDQIRRAASLLKDKAQADWIRYKLDRQFDHILVDEAQDTNEQQWDIIF
AMAEEFWAGAGQHEDRLRTLFVVGDYKQAIFRFQGTSPENFRKAAGRVRNLMRAAARNAA
QLRAEYEPREMQELGLERSFRTAQPVLDFVDQAIAGIGHERFGLDRAAQRHQGEERPGYV
ALWRPVGFDTGEEEEAPEDPGEGDEGEETWLSGPNRQMADRIAQQVREWLDPHGDGFTLS
KGKVRRATAGDIMVLVRQRKELAGLIVARLHAAGVDVAGVDRLRLGAPLAVKDLVAALRF
AAQPLDDLNLASLLVSPLVGWSQEQLLAHGYRDKHVRLWDHLRASSDAEVGRTLLQLGEL
LALADYEPPHALLQWLLVGPWRARRKLIARLGSEAGDPIDELVNAARAYAVTDTPSLAGF
LAWFEAGDGELKREADNAGGQVRVMTVHGSKGLQAPIVILADATGNPESARESGVSLPDP
RDKNRRIPFPPLSKAEKVGPVAEEIAQAREADEQEHWRLLYVAMTRAEEALFVGGALGPR
DKGQPASKSWYAQLRTLFEEQEEEVDAIWGGAFTQGSLGPFVPMRAAPAELPLRAPLPEW
TGRVPAAEPRPPRPLAPSALGEEDAPDPPFPPGAGQQAARRGTVLHALLERLPALAPELR
EAEAERWLKRNAKDLPTEMRSAILADALDVVANPAWAEIFGPDSLAEVPVAAIVGGQVVA
GTIDRLVIGPDRVRLVDYKTSRRPPASLGEVPRGVLRQMAAYAAALEQTFPGRDVEVGIL
YTSSPQLIEVPADVLEAHKPALAATQ
NT seq
3501 nt
NT seq
+upstream
nt +downstream
nt
atgagcggtccggccaaggtctacccgctgcacggcaaccagatgcccgcggtgaacccg
ctcgacaccgtctggctttcggcctcggcggggacgggcaagacgcaggtgctctcctcg
cgcgtgctgcgcctgctgctccagccggggatctccccctcgcagatcctgtgcctgacc
ttcaccaaggcgggcgcaaccgagatggccgcgcgcatcaacggcacgctcgccgaatgg
gtccgcatggaggatgtcgagcttttcccgcgcctcgaagccatcggcgcgccgaccgat
ggcgcgacgatggcgcgcgcgcgcacgctctttgccgccgtgctcgattgcccgggcggc
gggcttcgtatcgacaccatccacgccttctcgcagtggttgcttgcgaccttcccgctg
gaagcggacctcattccgggcagccgcccgatggaggaccgcgaacgtacgttgctcgcc
aagcaggttctcgccgatctcctggtcgaagccgaggaggacccgctcggcgatccgcag
ctgctcgatgcgatctcggcgctgtcgctgcgccatggtcccgatgccgtggtcggcttc
ctgctgcgctgcgcaggcgcgcgcgaggtctggtttgggcccggaagctggcaggcgggc
gacatgcgcgcacatgtcctgcgcctcctcgaccttcccccgcaggccgacgccgacatg
ctggccgagctgtgctcggacgcgcgtttcgacgtggcttcgctgcgtcgctgcatggag
gtgaaccacgagtggaacaccaagaccggccttgaggcggtcgaccgcatcagcgagtgg
ctgctgggcaacccgacccagcgcgcggcctccatcgacgagatggccaaggccttcctc
acccagaagggcgagcccaaggccagcaagtcgcaggacaagatcgagccttcctatccc
gactatgccgcgcgcgtggtggcggggatcgagggcgtgcgcaccttgcgcgcgatgctc
gaccttgtcgatcatctggtcccgtcgctgcgtctgggccgcgcctttgcgattgcctgg
gacgaggcgaagagccgcgagggcctgatcgacttcgacgatcagatccgccgcgccgcc
tcgcttctgaaggacaaggcccaggccgactggatccgctacaagctcgaccgccagttc
gatcacatccttgtcgatgaggcgcaggatacgaacgagcagcagtgggacatcattttc
gcgatggccgaggagttctgggcgggcgcgggccagcacgaggaccggctgcgcacgctc
ttcgtcgtgggcgactacaagcaggcgatcttccgcttccagggcaccagccccgaaaac
ttccgcaaggccgcggggcgcgtgcgcaacctgatgcgcgccgccgcgcgcaatgccgcg
cagctgcgcgccgaatacgaaccgcgcgagatgcaggaactgggcctcgaacgcagtttc
cggacagcgcagcccgtcctcgatttcgtcgatcaggcgattgccgggatcggccatgaa
cgcttcggcctcgaccgggctgcgcagcgccaccagggcgaggagcgcccgggctacgtc
gcgctgtggcgtccggtcggtttcgacacgggcgaagaggaagaggcaccggaggatccg
ggcgagggggacgaaggcgaggagacctggctctccggccccaaccgccagatggccgac
cgcatcgcgcagcaggtgcgcgagtggctcgacccgcatggcgatggcttcacgctttcc
aagggcaaggtccgccgtgcgacggccggcgacatcatggtgctggtgcgccagcgcaag
gagctggctgggctcattgtcgcacgccttcatgccgcgggcgtggacgtggccggtgtc
gaccgtctgcgtctgggcgcgccgctggcggtcaaggatctggtcgcggcgctgcgcttt
gcagcccagccgctcgacgacctgaacctggcgagcctgctcgtatctccgctcgtcggc
tggagccaggaacagctgcttgcccatggttaccgcgacaagcacgtgcgcttgtgggac
cacctgcgcgcctcttcggacgccgaggtcggacgcacgttgctccagctgggcgaactg
cttgcgctggccgattacgaaccgccccatgcgctcttgcagtggctgctcgttggccct
tggagggcgcggcgcaagctgatcgcgcggctgggcagcgaggcgggcgatcccatcgat
gagctggtcaacgccgcgcgcgcctatgccgtcaccgatacgcccagccttgcgggtttc
ctcgcctggttcgaggcaggcgatggcgagctgaagcgcgaggcggacaacgcaggcggg
caggtgcgcgtgatgaccgtgcatggctccaagggcctgcaggcgcccatcgtgattctg
gccgacgccaccggcaatcccgaaagcgcacgcgaaagcggggtttcgttgcccgatccg
cgcgacaagaaccggcggatcccgttccccccgctctccaaggcggagaaggtgggcccg
gtcgccgaagaaatcgcgcaggcgcgcgaggcggacgagcaggagcactggcgcctcctc
tacgtcgccatgacccgcgccgaggaagcgctcttcgtgggcggcgcgctgggcccgcgc
gacaagggccagcctgcctccaagagctggtacgcgcagctgcgcacgctgttcgaagag
caggaggaagaggtcgacgcgatctggggcggggccttcacgcaaggttcgttgggtccc
ttcgtgcctatgcgcgcggcaccggccgagcttcccctgcgtgcgcctctgcccgagtgg
accgggcgtgttccagccgccgaaccgcgcccgccgcgcccgctcgcgccctcggcgctg
ggcgaggaggatgcgcccgatccgccgtttccgccgggcgccgggcagcaggccgcgcgg
cgcggcacggtgctccacgcacttctggagcgcctgcccgcgctcgcgcctgaactgcgt
gaggccgaggccgaacgctggctcaagcgcaacgcgaaagacctgccgacagagatgcgc
agtgcgatcctggccgatgcgcttgacgtggtggccaatcctgcgtgggccgagatcttc
gggccggacagccttgccgaagtgccggtggccgccatcgtcggcggacaggtggtggcg
ggcacgattgaccggcttgtgatcgggcccgaccgggtgcggctggtcgactacaagacc
tcgcgccgtccgcccgcttcgctgggcgaggttccgcgcggggttctgcgccagatggcg
gcctatgccgccgcactcgaacagaccttcccggggcgcgatgtggaggtagggatcctc
tacacgtccagcccgcagcttatcgaggtgcccgccgatgtgctcgaggcgcacaagccc
gccttggcggcaacgcagtaa
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