Novosphingobium decolorationis: HT578_04395
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Entry
HT578_04395 CDS
T07993
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ndr
Novosphingobium decolorationis
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndr03032
]
HT578_04395 (topA)
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_04395 (topA)
Enzymes [BR:
ndr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
HT578_04395 (topA)
DNA replication proteins [BR:
ndr03032
]
Prokaryotic type
DNA Topoisomerases
HT578_04395 (topA)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
HT578_04395 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Zn_ribbon_Top1
HC2
Toprim_4
DUF7343
Motif
Other DBs
NCBI-ProteinID:
QVM83051
LinkDB
All DBs
Position
complement(956964..959654)
Genome browser
AA seq
896 aa
AA seq
DB search
MQLVIVESPAKAKTIEKYLGKDYKVLASYGHVRDLPPKDGSVRPDEGFEMDWELYGDKQK
QVRAITDAAKEADRLILATDPDREGEAISWHVLELLKKRRALPKEVERVTFNAITKATVT
KAMQEPRELDQDLIDAYLARRALDYLFGFTLSPVLWRKLPGAKSAGRVQSVALRLIVDRE
REIEAFKPQEYWSVAALMAHDGTDFTAKLVQFEGEKLDRLSLGEEGVAMRAKAAVENGAF
KVENVETKPHRRNPQPPFTTSTLQQEAARKLGFSASQTMRVAQGLYEQGAITYMRTDGVQ
MDPSAIQDCRKAVADRYDGHFLPDKPRHYETKAKNAQEAHEAIRPTDFTKDKLGSGDAGR
LYDLIFKRAMASQMASAQMERTTVTLRDGTGRTELRASGQVVKFPGFLAVYEEGQDNKSD
DDDSGLLPFMKAGDMPAKKDVTAEQHFTQPPPRFSEASLVKRLEELGIGRPSTYAATIQV
LKDRNYVRTEKNRFFAEESGRLLTSFLQRFFERYVAYDFTAGMEDELDDVSDGRQAWKDL
LEAFWRDFKPKSDEIMELKPSDVTKELDTFLSDFLFPPKEDGSDPRQCPKCADGKLALRG
GRYGAFIACSNYPECKFTRKFAQAGASGEQQDDQELGTHPETGEEILRKVGRFGPYIQMG
EGKDAKRASIPKDIDELDLDWAVKLLSLPRTVGTHPETGEEIVANIGRYGPYLLHNGKYG
KLKTTADVFETGMNAAVSILAEAAAGRGGGRTKAEPIKVLGKHPTSDGEMKVMSGRYGPY
VTDGTYNATLPRDSKPEDLTDAEAIALIDAKAAKGPPKGKKKAPAKKKAPAKKAAPKKAA
PKKAAAKKADEGEGEAAPKKAPAKKAAPKKTTAKKAPAKKADTAGEDQGDDVPWDA
NT seq
2691 nt
NT seq
+upstream
nt +downstream
nt
atgcagcttgttatcgtcgagtcacccgccaaggccaaaaccatcgagaagtatctcggc
aaggactacaaggtgctcgccagctacggccacgtccgcgacctgccgcccaaggatggc
tcggtccgcccggacgaaggcttcgagatggactgggagctttatggcgacaagcagaag
caggtccgcgccatcaccgatgcggccaaggaagccgaccgcctgattctcgcgactgac
cctgatcgcgaaggcgaggccatttcctggcacgtgctggagcttctcaagaagcgccgt
gcgctgcccaaggaggtggagcgcgtcacgttcaacgcaatcaccaaggcgaccgtcacc
aaggcgatgcaggagccgcgcgagctcgatcaggacctgatcgacgcctacctcgcgcgc
cgtgcgctggactacctgttcggcttcacgctgtcgccggtgctctggcgcaagctgccc
ggcgccaagtcggcaggccgcgtgcagtcggtggcgctgcgcctgatcgtggaccgtgag
cgcgagatcgaggcgttcaagccccaggaatactggtcggttgcggcgctgatggcgcac
gatggtacggacttcaccgccaagctcgtccagttcgagggcgagaagctcgaccgcctg
tcgctgggcgaggagggcgtcgcgatgcgcgccaaggcggcggtcgagaacggcgccttc
aaggtcgagaacgtcgagaccaagccgcaccgccgcaacccgcagccgcccttcaccacc
tcgaccctgcagcaggaagccgcgcgcaagctcggcttctcggccagccagaccatgcgc
gtggcgcaggggctctacgagcagggcgcgatcacttacatgcgtaccgacggcgtgcag
atggacccgagcgcgatccaggactgccgcaaggccgttgcggaccggtatgacgggcat
ttcctccccgacaagccgcgccactacgaaaccaaggcgaagaacgcgcaggaagcccac
gaggcgatccgcccgacggacttcaccaaggacaagctgggctcgggcgatgcggggcgt
ctctacgacctcatcttcaagcgcgcgatggcgagccagatggcctcggcacagatggaa
cgtacgaccgtcactctgcgtgatggaacgggccgcaccgaactgcgcgcctcgggccag
gtcgtgaagttcccgggtttcctggccgtctacgaggaaggccaggacaacaagtcggac
gatgatgacagcggcctgctgcccttcatgaaggcgggcgacatgccggccaagaaggac
gtcaccgccgagcagcacttcacccagccgccgccgcgcttttccgaagccagcctcgtc
aagcggctggaggagctgggcatcgggcgcccctcgacctacgcggcgacgatccaggtc
ctgaaggaccgcaactacgtgcggaccgaaaagaatcgtttcttcgccgaggaatcgggc
cggcttctcacctcgttcctgcagcgcttcttcgaacgctatgtcgcctatgacttcacg
gcgggcatggaagatgaactcgacgacgtctcggacggccgccaggcctggaaggacctg
ctcgaagcgttctggcgcgacttcaagcccaagtccgacgagatcatggagctgaagccc
tcggacgtgaccaaggagctggacacgttcctgtccgacttcctgttcccgcccaaggag
gatggctccgacccgcgccagtgccccaagtgtgcggacggcaagctggcgctgcgcggc
ggtcgctacggggcgttcatcgcctgctcgaactaccccgagtgcaagttcacccgcaag
ttcgcgcaggccggtgccagcggcgaacagcaggacgatcaggaactgggcacccacccc
gagacgggcgaggagatcctgcgcaaggtcgggcgcttcggtccctacatccagatgggt
gagggcaaggacgccaagcgcgcctcgatccccaaggacatcgacgagctcgatctggac
tgggctgtcaagctgctgagcctgccgcgcacggtcggcacgcaccccgaaacgggtgag
gaaattgtcgcaaacatcggtcgttatgggccgtacctcttgcacaacggcaagtacggc
aagctcaagactactgcggatgtgttcgagacgggcatgaacgcagcggtctcgatcctg
gctgaggcggccgcgggccggggcggcgggcgcaccaaggccgagccgatcaaggtcctg
ggcaagcaccccaccagcgacggcgagatgaaggtcatgtcgggccgctatggcccctac
gtgaccgacggcacctacaacgccacgctcccgcgcgacagcaagcccgaggacctgacc
gacgccgaggccatcgccctgatcgacgcgaaggccgccaagggcccgcccaagggcaag
aagaaggcaccggcgaagaagaaggcccccgccaagaaggccgcgccgaagaaggccgcg
ccgaagaaggccgcggcgaagaaggcggacgagggtgagggcgaagctgcgcccaagaag
gctccggcaaagaaggcggccccgaaaaagacgacggccaagaaagccccggcgaagaag
gctgatacagcgggcgaggatcagggcgacgatgtgccctgggacgcgtaa
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