Novosphingobium decolorationis: HT578_10115
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Entry
HT578_10115 CDS
T07993
Name
(GenBank) RNA polymerase sigma factor
KO
K24073
RNA polymerase sigma factor CnrH
Organism
ndr
Novosphingobium decolorationis
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndr03021
]
HT578_10115
Transcription machinery [BR:
ndr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HT578_10115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_1
PhyR_sigma-like
Cas9_b_hairpin
HTH_10
Motif
Other DBs
NCBI-ProteinID:
QVM83999
LinkDB
All DBs
Position
2225996..2226562
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AA seq
188 aa
AA seq
DB search
MTACLPDCSDGELAALALGGRQAAYGELVRRHQGWVHRLVRSHVGSMDEALDVTQASFVA
AFAALNRYDVTRPFQVWMSRIVINKCHDWQRRRAVRNFFALALPLGEADGVADDAPLPDQ
AIGAEQQLAQAMKAIAALPSSLKDTLILRTIDEKSEAETAEILGISQKAVETRLYRARAR
LSEILKKV
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcgtgcctccccgactgctcggacggggagctcgcggctctggcgcttggaggc
cggcaagcggcctatggcgagctggtccgccggcatcaaggttgggttcaccggctcgtg
cgcagccatgtcggatctatggatgaggcattggatgtcacccaggcgagcttcgtcgcg
gcctttgccgcactcaaccgctatgacgtaacccgacccttccaggtctggatgtcccgg
attgtcatcaacaaatgccatgactggcagcgtcggcgagcggttcgaaatttctttgcc
ctagccctaccgctcggcgaggcggacggcgtcgccgacgacgcaccgctgcccgatcag
gcgatcggggccgaacagcagctcgcgcaagcaatgaaagcgattgctgccctgccgtct
tccctcaaggacacgcttattttgcgtacgatcgacgagaaatcggaagctgaaaccgcc
gaaattctcgggatcagccagaaggcggtcgaaacgcgcctctatcgagctagggcacgc
ctttcggaaatattaaagaaagtttga
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