Novosphingobium decolorationis: HT578_11400
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Entry
HT578_11400 CDS
T07993
Symbol
pnp
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HT578_11400 (pnp)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndr03019
]
HT578_11400 (pnp)
03016 Transfer RNA biogenesis [BR:
ndr03016
]
HT578_11400 (pnp)
Enzymes [BR:
ndr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
HT578_11400 (pnp)
Messenger RNA biogenesis [BR:
ndr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
HT578_11400 (pnp)
Transfer RNA biogenesis [BR:
ndr03016
]
Prokaryotic type
tRNA degradation factors
HT578_11400 (pnp)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
S1
RNase_PH_C
PNPase
KH_1
S1_RRP5
KH-I_KHDC4-BBP
OB_RRP5_4th
S1_2
DUF2152
Motif
Other DBs
NCBI-ProteinID:
QVM84213
UniProt:
A0ABX8E540
LinkDB
All DBs
Position
complement(2474586..2476859)
Genome browser
AA seq
757 aa
AA seq
DB search
MFDVKTVSMEWGGKTLTLETGRIARQADGAVLATYGETVVLCAVTAAKSVKEGQDFFPLT
VHYQEKFSSAGRIPGGFFKRERGATEKETLTSRLIDRPVRPLFPEGFYNEINVICQVLSY
DGETEADIVAMIAASAALTISGVPFMGPIGACRVGFEDGEYTLNPKQTAALENGRLDLVV
AATGNAVMMVESEAKELTEDEMLGAVMFAHDECKKVVDLVIDLAEQAAKEPWEIDLSDNT
ADIKAKLKKAVGKDVAAAYKLTDKSARSNALNAARAKAKEAFGEESAQTQMVAIKTMKKL
EAEIVRGAILKDGTRIDGRKLDQVRPIESMVGFLPRTHGSALFTRGETQAICTTTLGTKD
AEQMIDGLEGLSYSSFMLHYNFPPYSVGEVGRFGAPGRREIGHGKLAWRALHPVLPAKED
FPYTIRILSDITESNGSSSMATICGGCLSMMDAGVPLARPVSGIAMGLILEGDDFAVLSD
ILGDEDHLGDMDFKVAGTENGITTMQMDIKIAGITKEIMGKALEQAKAGRAHILGEMTKA
LGSARTELSAHAPRIETIQIDKSKIRDVIGTGGKVIREIVAETGAKVDIDDEGVIKISSS
DINQIEAAKAWIQGIVEEAEVGKIYNGKVVNIVDFGAFVNFMGGKDGLVHVSEMKNERVE
KPTDVVKEGQEVKVKVLEIDNRGKVRLSMRVVDQETGEELEDTRPPKAPRGDRDGGGRGG
DRRGPRRGGRDGGRDRGPRGGNEGGDPGHMPAFLKED
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atgttcgacgtcaagaccgtatcgatggagtggggcggcaagaccctcactctcgaaacc
ggccgcatcgcccgccaggcggacggtgccgttctcgccacctacggcgaaaccgtggtg
ctctgcgcggtgaccgccgccaagtcggtgaaggaaggccaggacttcttcccgctgacc
gtgcactaccaggaaaagttctcgtcggcgggccgtatccccggcggcttcttcaagcgt
gagcgcggcgcgaccgaaaaggaaacgctgaccagccgcctgatcgaccgtccggtgcgc
ccgctgttccccgaaggtttctacaacgaaatcaacgtcatctgccaggtcctgagctat
gacggcgaaaccgaggccgacatcgtcgcgatgatcgccgcttcggctgcgctcaccatc
tcgggcgtgcccttcatgggcccgatcggcgcgtgccgcgtcggcttcgaggatggcgaa
tacacgctcaaccccaagcagaccgccgcgctcgagaacggccgcctcgacctcgtcgtc
gccgccaccggcaacgccgtgatgatggtcgaatcggaagccaaggagctgaccgaggac
gagatgctgggcgccgtcatgttcgcgcatgacgagtgcaagaaggtcgtcgacctggtc
atcgaccttgccgagcaggccgccaaggagccttgggaaatcgacctgtcggacaacacc
gccgacatcaaggcgaagctcaagaaggccgtcggcaaggacgttgccgccgcctacaag
ctgaccgacaagtcggcccgttcgaacgcgctcaacgcggcgcgcgccaaggccaaggaa
gctttcggcgaggaatcggcgcagacccagatggtcgccatcaagaccatgaagaagctc
gaagccgagatcgttcgcggcgccatcctcaaggacggcacccgtatcgacggccgcaag
ctcgaccaggtccgcccgatcgaatcgatggtcggcttcctgccgcgcacccacggttcg
gcgctgttcacccgcggtgaaacgcaggcgatctgcaccacgacgctgggcaccaaggac
gccgagcagatgatcgacggcctcgaaggcctgtcgtattcgtcgttcatgctgcactac
aacttcccgccctactcggtcggtgaagtgggccgcttcggcgcgccgggccgccgcgaa
atcggccacggcaagctggcatggcgcgcgctgcacccggtgctgcccgccaaggaagac
ttcccctacaccatccgcatcctctcggacatcaccgagtcgaacggttcgtcctcgatg
gcgacgatctgcggcggctgcctctcgatgatggacgcgggcgttccgctggcacgtccg
gtttcgggcatcgccatgggcctgatcctcgaaggcgatgacttcgcggttctttcggac
atcctgggcgacgaggatcacctcggcgacatggacttcaaggtcgcaggcaccgagaac
ggcatcaccacgatgcagatggacatcaagatcgccggcatcaccaaggaaatcatgggc
aaggcgctcgagcaggccaaggccggccgcgcgcacatcctgggtgagatgaccaaggct
ctgggttcggcccgcaccgagctttcggcccacgcgccgcgcatcgagacgatccagatc
gacaagtcgaagatccgtgacgtcatcggcaccggcggcaaggtcatccgcgagatcgtc
gccgagaccggcgccaaggtcgacatcgacgatgaaggcgtgatcaagatctcctcctcg
gacatcaaccagatcgaggccgccaaggcctggatccagggcatcgtcgaggaagccgaa
gtcggcaagatctacaacggcaaggtcgtcaacatcgtcgacttcggtgccttcgtgaac
ttcatgggtggcaaggacggcctcgtccacgtctccgaaatgaagaacgagcgcgtcgaa
aagccgaccgacgtcgtcaaggaaggccaggaggtcaaggtcaaggtcctcgagatcgac
aaccgtggcaaggtccgcctctcgatgcgcgtcgtcgaccaggaaaccggcgaagagctg
gaagacacccgtccgcccaaggcgccgcgcggtgatcgtgacggcggtggccgtggcggc
gatcgccgtggcccgcgccgtggtggccgtgacggtggccgcgaccgcggtccgcgcggt
ggcaacgaaggtggcgatccgggccacatgcccgccttcctcaaggaagactga
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