Novosphingobium decolorationis: HT578_12880
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Entry
HT578_12880 CDS
T07993
Symbol
dnaQ
Name
(GenBank) DNA polymerase III subunit epsilon
KO
K02342
DNA polymerase III subunit epsilon [EC:
2.7.7.7
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03030
DNA replication
ndr03430
Mismatch repair
ndr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HT578_12880 (dnaQ)
03430 Mismatch repair
HT578_12880 (dnaQ)
03440 Homologous recombination
HT578_12880 (dnaQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ndr03032
]
HT578_12880 (dnaQ)
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_12880 (dnaQ)
Enzymes [BR:
ndr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
HT578_12880 (dnaQ)
DNA replication proteins [BR:
ndr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
HT578_12880 (dnaQ)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
HT578_12880 (dnaQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_T
RNase_H_2
DNA_pol_A_exo1
DUF3131
TerB_N
YppF
Motif
Other DBs
NCBI-ProteinID:
QVM84462
LinkDB
All DBs
Position
2785854..2786537
Genome browser
AA seq
227 aa
AA seq
DB search
MREIIFDTETTGFDPKNGDRMVEIGCVEMINRVETGNSYHAYFNPQRSMPAEAEAVHGLS
EAFLADKPLFAECAQEFLDFVQDSPMVAHNATFDFNFINAELAMAGHRAIDLDRMVDTIV
LAKAKHPGAKLSLDALCSRYGIDRSHRTKHGALLDAELLAQVYVELRGGRQIGLELVAQT
TEIVSETKVLTRKDRPFRQPRPHAATDEELSAHAEFLKSVDTPLWGA
NT seq
684 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgagattatcttcgataccgagaccaccggctttgaccccaagaacggggaccgt
atggtcgagatcggctgtgtcgagatgatcaaccgggtcgagacgggcaattcctaccac
gcctatttcaacccccagcgctcgatgcccgccgaggccgaggcggtccacggcctgtcc
gaagccttccttgccgacaagccactctttgccgagtgcgcgcaggagtttctcgacttc
gtccaggacagcccgatggtcgcccacaacgcgaccttcgacttcaacttcatcaacgcc
gagctggcgatggccggacaccgtgcgatcgaccttgatcgcatggtcgacaccatcgtg
ctggccaaggccaagcacccgggcgcgaaactttcgctcgatgcgctgtgctcgcgctat
ggaattgatcgaagtcatcgcaccaagcacggcgctctcctagacgccgaattgttggcg
caggtctatgtggagctgcggggcggccgccagataggtctcgaactggtcgcacaaaca
actgagatcgtgtcggaaaccaaggtcctcacacgaaaggatcgtcccttccgacagccg
cgtccccacgcggccaccgatgaggaactttccgcgcacgcggagtttctgaagtcggtc
gataccccgctttggggtgcctga
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