Novosphingobium decolorationis: HT578_13285
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Entry
HT578_13285 CDS
T07993
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HT578_13285
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndr03019
]
HT578_13285
Enzymes [BR:
ndr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
HT578_13285
Messenger RNA biogenesis [BR:
ndr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HT578_13285
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-ProteinID:
QVM84533
LinkDB
All DBs
Position
complement(2858218..2859711)
Genome browser
AA seq
497 aa
AA seq
DB search
MSYFSDLGLAEPLLRALEAKGYTDPSPIQRKSIPSLLEGRDLLGIAQTGTGKTAAFSLPS
LHRLAADPKPRQNAGCRMLVLSPTRELAAQIADNMRGYAKFLNLSIQCVFGGVPAGKQAR
ALERGCDVLVATPGRLLDLIDSRALTLKHVEIFVLDEADQMMDLGFIVPLKRVAALLPKQ
RQSLFFSATMPQAIAELGKQFINNPIKVEVAPQSTTAERVEQYATFINQAEKQALLTIRL
REGLAEDAAEKAEHGAIDRALVFTRTKHGADRVVRHLTAAGIPAAAIHGNKSQAQRTAAL
GGFRQGTIRVLVATDIAARGIDVSGVSHVYNFEIPNVPEQYVHRIGRTARAGADGVAVSF
VAPDEKPYIRDIERLTRVKLTALGLPEDFVVEARRLPAPTRRKPEPQGQGRSGGGRGGNN
ARGGNGGGQGSRSGGGKPRRDRQGGEGERQDRREAPRGERNNGANAGGAGEGEHKRCFRP
RGGKSVGTHKNAVRRAG
NT seq
1494 nt
NT seq
+upstream
nt +downstream
nt
atgtcctatttttccgaccttggtctggccgagcccctgctgcgtgcgctcgaggccaag
ggctataccgatccctcgccgatccagcgcaagtcgatcccctcgcttctcgagggccgc
gacctgctgggcatcgcgcagaccgggaccggcaagacggcagccttctcgctgccctcg
ctgcaccgcctcgccgccgatcccaagccgcgccagaacgcgggctgccgcatgctggtg
ctctcgcccacgcgtgagctggccgcgcagatcgccgacaacatgcggggctatgccaag
ttcctcaacctctcgatccagtgcgtcttcggcggcgttccggcgggcaagcaggcccgc
gcgctcgagcgtggctgcgacgtccttgtcgcgacgccgggccgtctgctcgacctcatc
gacagccgcgcgctgaccctcaagcacgtcgagatcttcgtgctcgacgaagccgaccag
atgatggacctgggcttcatcgtgccgctcaagcgcgtcgccgccctgctccccaagcag
cgccagagcctgttcttctcggccaccatgccccaggccattgccgagctgggcaagcag
ttcatcaacaacccgatcaaggtcgaggtcgccccgcagtcgaccacggccgagcgcgtc
gaacagtacgcgaccttcatcaaccaggccgagaagcaggcgctgctcaccatccgcctg
cgggaaggcctcgccgaggacgccgcagaaaaggccgagcacggcgcgatcgaccgcgcg
cttgtcttcacccgcaccaagcacggcgcggaccgcgtggtgcgccacctgaccgctgcc
ggcattcccgccgccgcgatccatggcaacaagagccaggcccagcgcaccgccgcgctc
ggcggcttccgccagggcacgatccgcgtccttgtcgcgaccgacatcgccgcgcgcggc
attgacgtctcgggcgtgtcccacgtctacaacttcgagatcccgaacgtgcccgaacag
tacgtccaccgcatcggccgcaccgcgcgtgctggtgccgacggcgtggccgtgagcttc
gtcgcgccggacgagaagccctacatccgcgatatcgagcgcctgacccgcgtcaagctg
accgcgctcggcctgcccgaggatttcgtggtcgaggcacgccgcctgcccgctcccacc
cgccgcaagcccgagccccagggccagggccgctcgggcggtggccgcggcggcaacaac
gcccggggcggcaacggcggtggccagggtagccgttcgggcggcggcaagccgcgccgc
gatcgccagggcggtgagggcgagcgccaggatcgccgcgaagctccgcgcggtgagcgc
aacaacggcgcgaacgcgggcggtgcgggcgaaggcgagcacaagcgctgcttccgtccc
cgcggcggcaagagcgtgggcacgcacaagaacgcggtgcgccgcgcgggctga
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