Novosphingobium decolorationis: HT578_16025
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Entry
HT578_16025 CDS
T07993
Name
(GenBank) L,D-transpeptidase family protein
KO
K21470
L,D-transpeptidase YcbB
Organism
ndr
Novosphingobium decolorationis
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
ndr01002
]
HT578_16025
01011 Peptidoglycan biosynthesis and degradation proteins [BR:
ndr01011
]
HT578_16025
Peptidases and inhibitors [BR:
ndr01002
]
Cysteine peptidases
Family C82
HT578_16025
Peptidoglycan biosynthesis and degradation proteins [BR:
ndr01011
]
Peptidoglycan biosynthesis and degradation
Transpeptidase
HT578_16025
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YkuD
Scaffold
DUF3318
Motif
Other DBs
NCBI-ProteinID:
QVM85000
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All DBs
Position
3474125..3475582
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AA seq
485 aa
AA seq
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MSSIQRKACGLLSSLSALSLLAQPVLAQSRAQSGPEDILPRPHSPAAQASPTSTPSSAPT
RAPKNAPAPTTATVVSEGTATRTTSEPVVQELFLSAPVLPWNISDAQDLLATIRGIGSEG
LLPADYQPEALQAAIAAGEGDALDELASKLLGWLVEDLRDGRTPMPARVQWFAVDPDRDE
MPTGKVMAQALAAHDIPGLVAALAPTVPDYAALKEELAATPKAQKDRRLLIMANMDRWRW
LKRDLGEVYLLTNVPEFQLRLTVKNKIIRTYKTVVGKPGRTATPQLAETVSAVVFNPTWT
VPQSIVKGEGLGQKVLNNPTWARNAGYKATKDANGNVWVVQQPGPNNSLGMMKIDMPNEH
AIFLHDTPSKQYFNHEVRAYSHGCIRTERAVELGMTMAILGAGMSGSEAADISRSGKYTK
VEMTRTFPVYLTYFTIARDIEGNLETFGDIYGRDKPVLESFQQPRQLKTSQRKSEEEIIK
LDNPL
NT seq
1458 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcatccagcgcaaggcctgtggccttctttcgagtctttcggcgctctccctc
ctggcccagccggtgctggcgcagagtcgtgcgcagagcggccccgaagatatcctgccc
cgcccgcattcgcccgccgcgcaggcctctcccacatcgacgccgagctccgcgcctacg
cgcgctccgaagaacgcccccgcgccgaccactgcgaccgtggtgagcgaggggacggcc
acgcgcaccacgtccgagccggtggtgcaggagctcttcctttccgcgcccgtgctgccc
tggaatatctcggacgcgcaggatcttctcgccacgatccgcgggatcgggagcgagggc
ctgttgccggccgattatcagcccgaagcgctccaggccgcgatcgcggcgggtgagggc
gatgcgctcgacgaactcgcgagcaaactcctgggctggctggttgaggacctgcgtgac
ggacgcacgcccatgcccgcgcgcgtgcagtggttcgcggtcgatcccgaccgcgatgag
atgcccactggcaaggtgatggcccaggcactggccgcgcacgacattcccggcctcgtc
gccgcgctggcgccgactgtgccggactacgccgcgctcaaggaagaactggccgcgacg
cccaaggcgcagaaggaccggcgtctcctcatcatggccaacatggatcgctggcgctgg
ctcaagcgcgatctgggcgaagtctatctcctgaccaacgtgcccgagttccagctgcgc
ctcacggtcaagaacaagatcatccgcacctacaagacggtcgtcggcaagccggggcgt
actgcgacgccgcagctggccgaaacggtctcggcggtcgtgttcaacccgacctggacc
gtgccgcagtcgatcgtgaagggcgagggtctgggccagaaggtgctcaacaacccgacc
tgggcgcgcaatgcgggctacaaggccaccaaggacgccaacggcaacgtctgggtcgtc
cagcagccgggcccgaacaattcgttgggcatgatgaagatcgacatgcccaacgagcac
gcgatcttcctgcacgacacgccctccaagcagtatttcaaccacgaagtgcgcgcttac
agccacggctgcatccgcaccgaacgcgcggtcgaactgggcatgacgatggcgatcctg
ggggctggcatgtcgggcagcgaggcggccgacatctcgcgctcgggcaagtacaccaag
gtcgagatgacccgtacctttccggtctatctcacctacttcaccatcgcgcgcgatatc
gaaggcaacctcgaaaccttcggcgacatctacggtcgcgacaagcccgttctggaaagc
ttccagcagccccgccagctcaagacctcccagcgcaagagcgaggaagaaattatcaag
ctggataacccgctgtaa
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