Novosphingobium decolorationis: HT578_16035
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Entry
HT578_16035 CDS
T07993
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HT578_16035 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ndr03019
]
HT578_16035 (recQ)
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_16035 (recQ)
Enzymes [BR:
ndr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HT578_16035 (recQ)
Messenger RNA biogenesis [BR:
ndr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
HT578_16035 (recQ)
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
HT578_16035 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
SecA_DEAD
PNPOx_N
MurD-like_N
Motif
Other DBs
NCBI-ProteinID:
QVM85002
LinkDB
All DBs
Position
complement(3476349..3478226)
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AA seq
625 aa
AA seq
DB search
MNDDDWPFETTFYGDDDDWQSDLAPPVDNTPAAPPSAERVREALQATFGFSGFRGVQDQV
VDRVLQGQSTLAVMPTGAGKSLTYQLPAVLLEGTCVVVSPLIALMHDQLRSARANGIHAA
TLTSVDADWRETLDAFRAGQLDLLYIAPERASQPAFRDLLASTRISLFAIDEAHCVSEWG
HDFRPDYRLLKPLLDAFPQVPRLALTATADRHTRADILTQLGIGEDGLIVAGFDRPNIRY
AIRPRDSVARQLKGVIDENPGPGIIYAPTRARVEQLAETLAKSTGRPVLPYHAGLPSEVR
QKNQAAFVASEDMVMVATVAFGMGIDKPDVRFVAHAGIPKSIEGYYQETGRAGRDGDPSV
AVMFWGADDFARARMRLAEVDEARQQSERQRLESLAGLIETADCRRAVLLRHFGEEPPAK
CGNCDTCLEPVDVIDATTLAQKLLSAVYRTGQTYGLGHLEKVLTGVTDDRVLQRGHDQLS
VFGILREEEKPILKALARALQARGSLVPTEHGGLALGGDAREILKNEAAVMIVRPPKKER
GRRGRGADQTPNPVGDPLFDALRELRRDLAKDQGVPPYVIFHDATLREMASMRPSSLSEL
GSITGVGSRKLDAYGEEFLHVLQQF
NT seq
1878 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacgacgactggcccttcgagacgaccttctacggcgatgatgatgactggcag
agcgaccttgccccgcccgtcgacaacacgcccgccgcgcccccgtctgccgagcgcgtg
cgcgaggcgctgcaggcgaccttcggcttttcgggctttcgcggggtccaggaccaggtg
gtggaccgcgtcctccaggggcagtccacgctggcggtgatgcccaccggcgcgggcaag
tccctcacctaccagctgcccgccgtgcttctcgaaggcacctgtgtggtcgtctcgccg
cttatcgcgctcatgcacgaccagctgcgctccgcgcgcgccaacggcatccacgcggcg
acccttaccagcgtcgatgccgactggcgcgagacgctcgacgcgttccgcgcaggccag
ctcgaccttctctacatcgcgcccgagcgggcgagccagcccgccttccgtgacttgctg
gcgagcacccgcatctcgctctttgccatcgacgaggcgcactgcgtctcggaatggggg
cacgacttccggcccgactaccgcctcctgaagccgcttctcgacgccttcccgcaggtc
ccccgcctcgcgctgaccgcgacggccgaccgccatacccgcgccgacatcctgacccag
ctcgggatcggcgaggacggcctcatcgtcgccgggttcgaccgccccaacatccgctac
gcaatccgcccgcgcgacagcgtggcgcgccagttgaagggcgtgatcgacgagaacccg
ggtcccggcatcatctacgcccccacccgcgcgcgcgtggaacagcttgccgagacactc
gcgaagtcaaccggccgcccggtcctgccctaccatgccgggttgccctcggaagtccgc
cagaagaaccaggccgccttcgtggcgagcgaggacatggtgatggtcgcgaccgtcgcc
ttcggcatgggcatcgacaagcccgacgtgcgcttcgttgcccacgccgggatccccaag
tcgatcgaaggctactaccaggaaacgggccgcgccgggcgcgacggcgatccttcggtc
gccgtcatgttctggggcgccgacgactttgcccgcgcgcgcatgcgcctggccgaagtc
gacgaggcgcgccagcaaagcgaacgccagcgccttgaatcgctcgccgggctgatcgag
accgcggactgccgccgcgccgtcctcttgcgccacttcggcgaggaaccgccggccaag
tgcggcaactgcgacacctgcctggaacccgtcgacgtgatcgacgcgacgacgctggcg
caaaagctgctttcggcggtctaccgtaccgggcagacctatggcctcggccacctcgag
aaggtgctgacgggcgtcacggacgaccgcgtgctccagcgcgggcacgaccagctgtcg
gtcttcggcatcctgcgcgaggaggaaaagccgatcctcaaggccctcgcccgcgccctt
caggcccgcggcagcctggtccccaccgaacacggcgggctggcgctcggcggcgatgcc
cgcgagatcctcaagaacgaggccgccgtgatgatcgtgcgcccgcccaaaaaggaacgc
ggacgccggggccgcggggcggaccagacgcccaacccggtcggcgatccgctcttcgat
gccctgcgcgaactgcgccgcgacctcgccaaggaccagggcgtgccgccctatgtcatc
ttccacgacgccacgttgcgcgagatggcctcgatgcgcccctccagcctttccgaactg
ggctcgatcacgggcgtgggcagccgcaagctcgacgcttacggcgaggaattcctccac
gttcttcagcagttctga
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