Novosphingobium decolorationis: HT578_16745
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Entry
HT578_16745 CDS
T07993
Symbol
rpoN
Name
(GenBank) RNA polymerase factor sigma-54
KO
K03092
RNA polymerase sigma-54 factor
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr02020
Two-component system
ndr02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
HT578_16745 (rpoN)
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
HT578_16745 (rpoN)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ndr03021
]
HT578_16745 (rpoN)
Transcription machinery [BR:
ndr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
HT578_16745 (rpoN)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
HTH_31
HTH_IclR
PKS_DE
Sigma70_r4
HTH_Crp_2
HTH_38
Phage_CII
HTH_3
Motif
Other DBs
NCBI-ProteinID:
QVM85122
LinkDB
All DBs
Position
3619793..3621343
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AA seq
516 aa
AA seq
DB search
MALGPRLDLRQTQSLVMTPQLQQAIKLLALSNLEIEAFIGDALDANPLLDVGRDPAPSGE
DGATSPEADVRRTSLEQSPADRLIGEGRGGEDNPLDIDTGAIDRDVDTGDGERLSLSDGA
VSGAAPSGEGDWGAALVGSAGEDGPGIDERAGGEESLFDHLDAQVGAVTGDPVRAGIARY
IIGLLDEAGYLPVRLEDVAHDLGAEMAEVEQGLALVQSLDPTGVGARSLSECIALQAIEA
DRHDPCMARLIANLDLVARGDLTRLKRMCGVDDEDMADMLAELRSYDPKPGLRFGGEPGG
AVTPDILVSARDDGGWDIRLNEATLPRLVVNRGYYVALKGSCEDKTSRAWLSEKLGDANW
LIKALDQRQKTILKVASELVKQQDGFFRKGVSQLRPLTLRAVAEAIGMHESTVSRVTSAK
FLNCARGTFELKYFFSSGVASASGEGGASAEAVKAAIRQLIDAEDPKAVLSDDTLVELLK
EKGFELARRTVAKYREAIGLGSSVQRRRQKKIAGAG
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggcgttggggccaaggctggacttacgccagacccagtcgctcgtcatgacgccgcag
ctccagcaggcgatcaagctgctggcgctgtccaatctcgaaatcgaagctttcatcggc
gatgcgctcgacgccaacccgctgctcgacgtcggccgtgatcccgcgccttcgggcgag
gatggggcgacctctcccgaagcggacgtgcggcgcacttcgcttgagcaatcgccggcc
gaccggctgattggtgaggggcgcggcggcgaggacaatcctctcgacatcgatacaggc
gccatcgaccgtgatgtcgacaccggcgatggcgagcgtctgtccctgtccgacggtgcc
gtgtccggtgccgcgccatcgggcgagggcgactggggcgcggcgctcgtcggcagcgcg
ggcgaggacggcccgggcatcgacgaacgtgcgggcggcgaggagagcctcttcgaccac
ctcgatgcgcaggtcggcgccgtcaccggcgatccggtgcgggcgggcatcgcgcgctat
atcatcgggcttctggatgaggcgggctacctgccggtccgcctggaggacgtggcccac
gatctgggggcggagatggccgaggtcgagcagggactggccctggtgcagtcgctcgat
ccgaccggggtgggcgcgcgcagcctgtcggaatgtatcgcgctgcaggccattgaggcc
gaccgccacgatccgtgcatggcgcgcctgatcgccaatctcgaccttgtcgcgcgcggt
gacctcacccggctcaagcgcatgtgcggggtggacgatgaggacatggccgacatgctg
gccgaactgcgttcctacgatcccaagccgggcctgcgttttggcggcgaaccgggcggg
gcggtgaccccggacatcctggtcagcgcgcgggacgatgggggctgggatatccggctc
aacgaggcgaccctgccgcgtctggtggtcaaccgggggtactacgtcgcgctcaaggga
agctgcgaggacaagacctcgcgcgcctggctttcggagaagctgggcgatgcgaactgg
ctgatcaaggcgctcgaccagcgccagaagacgatcctcaaggtcgcgagcgaactggtg
aagcagcaggacggcttcttccgcaagggcgtctcgcaactgcgcccgctcaccttgcgg
gccgtggccgaggcgatcggcatgcacgaatcgacggtgagccgggtcacttcggccaag
ttcctcaactgcgcgcgcgggaccttcgagctcaagtacttcttctcctcgggtgtcgcc
tccgcgagcggggagggcggggcatctgccgaagcggtcaaggccgcgatccgccagttg
atcgacgcggaagaccccaaggcggtgctctccgacgacacccttgtcgaactgctcaag
gaaaaggggttcgaactcgcccggcgcacggtcgcgaaataccgcgaggcaatcggcctt
ggcagttcggtgcagcgccgccgtcagaagaagatcgcaggcgcgggctga
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