Novosphingobium decolorationis: HT578_21130
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Entry
HT578_21130 CDS
T07993
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ndr
Novosphingobium decolorationis
Pathway
ndr03420
Nucleotide excision repair
ndr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ndr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HT578_21130
03430 Mismatch repair
HT578_21130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ndr03400
]
HT578_21130
Enzymes [BR:
ndr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HT578_21130
DNA repair and recombination proteins [BR:
ndr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HT578_21130
MMR (mismatch excision repair)
Other MMR factors
HT578_21130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
PcrA_UvrD_tudor
AAA_12
AAA_11
RA_3
DUF3553
Motif
Other DBs
NCBI-ProteinID:
QVM86377
LinkDB
All DBs
Position
complement(4588708..4591008)
Genome browser
AA seq
766 aa
AA seq
DB search
MPAAPAHPAGADASNPLIAGLNEPQREAVLTTEGPVLMLAGAGTGKTSALTRRLAYLVQS
RLAWPSEILCVTFTNKAAREMRERVGQLVGPAVEGMPWLGTFHAIAAKMLRRHAELVGLE
SNYTIIDTDDQLRLLKQLIQAEGIDEKRWPAKQLAGCIDRWKNRGLNPRDLDARENEAYA
EGKGQHFYHMYQERLKAVNACDFGDLLLHMLNILREHRDVLEQYQQRFKYVMVDEYQDTN
QVQYLWLRLIAQHRRNICVVGDDDQSIYSWRGAEVANILRFEKDFPGAKVIRLEQNYRST
PQILAAASGLIDENTQRLGKTLWTERHGGDKLHVVGVWDAPEEARRVGDEIERLEREGAP
LDQIAILVRAQYQTREFEDRFISIGMKYRIVGGFRFYERAEIRDALAYLRVIAQPADDLA
FERIYNTPKRGLGAKALEKLHLLARRRGIPLAKAALEICDTDELPARARNTLLSLMRDFA
RWRDMAREEGPADLIRTALDESGYTDALQAERTPEASGRLENLVELARAMEEYDSLGDFL
EHVSLVMDNDARDDEEKVTIMTMHAAKGLEFDNVFLPGWEDGVFPSQRSLDEGGLASLEE
ERRLAYVAITRARRKCTILHAANRRIYGQWTSSIPSRFIAELPEDQIESETTLSGGASLW
RAQWSEHADPFADVARMQPGRTVTRGPGWQRAAQREFDTAPKRVKESTRSAASFASKPRT
DIEVGARVFHEKFGYGTVASQEGNKLEIEFEKSGSKRVLDSFVKPA
NT seq
2301 nt
NT seq
+upstream
nt +downstream
nt
ctgcccgccgcgcccgcccatccagcaggcgccgacgcgtccaatcccctcatcgccgga
ctgaacgagccccagcgcgaagccgtcctgacgacggagggaccggtcctgatgctggcg
ggcgccggcacgggcaagacctcagccctcacccggcgcctcgcctatctcgtccagagc
cgcctcgcctggccgagcgagatcctgtgcgtcaccttcaccaacaaggccgcgcgcgag
atgcgcgaacgcgtcggccagctggttgggcccgcggtcgaagggatgccctggctcggc
acgttccacgccatcgcggccaagatgctgcgccgccatgccgaactggtgggcctggaa
tcgaactacacgatcatcgacaccgacgatcagctgcgcctcctcaagcagctcatccag
gcggaggggatcgacgagaagcgctggcccgccaagcaactggccgggtgtatcgaccgc
tggaagaaccgtggcctcaacccgcgcgatctcgacgcgcgcgagaacgaggcctacgcc
gagggcaagggccagcatttctatcatatgtaccaggagcgcctgaaagcggtgaacgcc
tgcgacttcggcgacctcctgctccacatgctcaacatcctgcgcgagcatcgcgacgtc
ctcgaacagtaccagcagcgcttcaagtacgtcatggtggacgaataccaggacaccaac
caggtccagtacctgtggctgcgcctgatcgcccagcaccgccgcaacatctgcgtggtg
ggcgatgacgaccagtcgatctattcctggcgcggcgccgaagtcgccaatatcctgcgc
tttgaaaaggactttccgggcgccaaggtgatccggctcgaacagaactaccgctccacg
ccgcagatcctggccgccgcctcgggcctcatcgacgagaacacgcagcgcctcggcaag
acgctctggaccgagcgccatggcggcgacaagctgcacgtcgtcggcgtctgggacgcg
ccggaggaagcgcgccgggtgggcgacgagatcgagcgcctcgaacgcgaaggcgccccg
ctcgaccagatcgcgatcctcgtgcgcgcgcaataccagacccgcgagttcgaggaccgc
ttcatctcgatcgggatgaagtaccgcatcgttgggggtttccgcttctacgaacgcgcg
gaaatccgcgatgccctcgcctatctgcgcgtcattgcccagcctgccgacgacctcgcg
tttgagcgcatctacaacacgcccaagcgggggctcggggccaaggcgctggaaaagctg
cacctgctggcacgccgccgaggcatcccgctcgccaaggccgcgcttgaaatctgcgac
accgacgaactgcccgcccgcgcacgcaacacactgctttcgctgatgcgcgatttcgcg
cgctggcgcgacatggccagggaagaagggcccgccgacctcatccgcaccgccctcgac
gagagtggctacaccgacgcactccaggccgaacgcacgcccgaggctagcggacgcctc
gaaaacctcgtcgaactcgcccgcgccatggaagagtacgacagcctcggcgacttcctc
gaacacgtcagccttgtcatggacaatgacgcgcgcgacgatgaggagaaggtcacgatc
atgaccatgcacgcggccaagggcctggaattcgacaacgtgttcctgcccggctgggag
gacggcgtgttcccctcgcagcgctcgctcgacgaaggcgggctggccagcctcgaggaa
gagcgccgcctcgcctacgtcgcgatcacccgtgcgcgccgcaagtgcaccatccttcat
gcggcgaaccggcgcatctacggccagtggaccagttcgatcccctcgcgcttcatcgcc
gagctgcccgaggaccagatcgagagcgagaccacgctgtcaggcggcgcctcgctctgg
cgcgcgcaatggtccgagcacgccgatcccttcgccgacgtcgcccgcatgcaaccgggc
cgtaccgttacgcgcgggccgggctggcagcgcgccgcccagcgcgaattcgacaccgcc
cccaagcgggtcaaggagagcacccgcagcgcggcgagcttcgcctccaagccccgcacc
gacatcgaggtgggcgcgcgcgtcttccacgagaagttcggctacggcaccgtcgcgtcg
caggaaggcaacaagctggagatcgagttcgagaagtcaggctccaagcgggtcctcgac
agtttcgtaaaacccgcctga
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